BAC Information

Click to search

BAC

Clone NameMSMg01-198K10
Chromosome2 (Build37)
Map Location 84,096,433 - 84,096,720
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725
Downstream geneCalcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198K10.T7 (MSMg01no198_k10.b1)MSMg01-198K10.TJ (MSMg01no198_k10.g1)
ACCAG385886AG385887
length744786
length of high quality
(start - end)
---289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no198_k10.b1 PHD_FILE: MSMg01no198_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:57 2005CHROMAT_FILE: MSMg01no198_k10.g1 PHD_FILE: MSMg01no198_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
GATCGACACTGTTCCAACATCTGTCTATCTGGTTCAACTTCATACCGGTC
ATCACTCGATCCACTTCTGTACCCCCTCTGCTCGCGTCTCTAGATACTGC
GAGAATGACAACGCCTCCCATTXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCGAGGACTGATGCAATTCGAGCG
CGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCAATCTAATATTAAAAATGTAATAT
CCATCAAAAAGCATAATTCACTTCTTTGAATCTTTTTGTACTTAATTTTA
ATAATTACAGTAAAATTTTGTCACTTCATGTTATTAGGAAACAAATAAAT
AAGTTGAATTTTTATTGAAAAACATATTCCTGAATTCATTAATGATTTGA
GAGAAAAAAAACTACATGTAATTGTCTTAGTTTTAAAATTTGGTTAATAA
TTATACAGAAAACTTCAAATGTAACCCAAATGCTTTCATAAGGCAGAAAA
AGTAAATCAAGTAATATTTGTTTCTCGCCGCCCCCCCATGTGTACAACAC
AATGTAGGAAGCAAAAACTGTGTTGTTTTGATTATATCAAATTCTGTGTG
CGGTTTCTTCTTTATACAAGGGCCAGGAAGTGGGAGTGGGTGGGTTGGCG
AGCATTTCTCTAGTTTTCTTTATTCCTAATCCCTATAATTCTTCTTTTTC
TTTCTTTCTTCTTCTCTATTAATCTATTTTTTCTTCCTCTTTTCTCTTTT
CTTTTTCCAATTATTTCCCTATTCTTTCTAATCTATCTCTCCATTTTCCT
ACCTTTTATCTTCATTACATCTTTCCTCCCCCATCATCCTACTATACTTT
CCCTCTCTCCATTCTTTATCTTCTCATTCCCACCTATCATACTATTACTC
TCACTTTCTTATTTTTCACTACCCACCCATCTCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_k10.g1 MSMg01no198_k10.g1 CHROMAT_FILE:
MSMg01no198_k10.g1 PHD_FILE: MSMg01no198_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:57 2005
         (289 letters)



>mm_chr2_84096231_84096920
          Length = 690

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%), Gaps = 1/288 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   aatctaatattaaaaatgtaatatccatcaaaaagcataattcacttctttgaatctttt 62
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 490 aatctaatattaaaaatgtaatatccatcaaaaagcataattcactcctttgaatctttt 431

                                                                       
Query: 63  tgtacttaattttaataattacagtaaaattttgtcacttcatgttattaggaaacaaat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgtacttaattttaataattacagtaaaattttgtcacttcatgttattaggaaacaaat 371

                                                                       
Query: 123 aaataagttgaatttttattgaaaaacatattcctgaattcattaatgatttgagag-aa 181
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 370 aaataagttgaatttttattgaaaaacatattactgaattcattaatgatttgagaggaa 311

                                                                       
Query: 182 aaaaaactacatgtaattgtcttagttttaaaatttggttaataattatacagaaaactt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aaaaaactacatgtaattgtcttagttttaaaatttggttaataattatacagaaaactt 251

                                                           
Query: 242 caaatgtaacccaaatgctttcataaggcagaaaaagtaaatcaagta 289
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 caaatgtaacccaaatgctttcataaggcagaaaaagtaaatcaagta 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space:   190680
Effective search space used:   190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)