BAC Information

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BAC

Clone NameMSMg01-199B08
Chromosome2 (Build37)
Map Location 86,714,195 - 86,830,436
singlet/doubletdoublet
Overlap geneOlfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101
Upstream geneOlfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1
Downstream geneOlfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199B08.T7 (MSMg01no199_b08.b1)MSMg01-199B08.TJ (MSMg01no199_b08.g1)
ACCAG386154AG386155
length727834
length of high quality
(start - end)		682 (46 - 727)291 (87 - 377)
definitionCHROMAT_FILE: MSMg01no199_b08.b1 PHD_FILE: MSMg01no199_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:31 2005CHROMAT_FILE: MSMg01no199_b08.g1 PHD_FILE: MSMg01no199_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,714,195 - 86,714,872)(86,830,146 - 86,830,436)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATTGAACTCAATACAAATTCACATTGTGTCTGTGATCACGTTAA
AATTTTGAGACACCAAATTATCTTAGTTATGATCTTAATTCAGGAAATTT
AAATAAAATATCATGCATTAAATTAAAAAATATAGAAAACAACTTCAATA
TGTTTCCAGCTCTTTTCTATATCAATTAACTGTAACTATATTTTATTAAA
GTAATAGACTACATTAAAACAAATAACTATTTGAAAGATGGATTATTATC
TTCTGATAATTTCAAACACATTTTTGACTAAAATTATTTTATTGAAATAT
GAATCATCACTAGTGTAATCTTCTTCCATCCACTCTAAGCTTGCCACAAC
CCTGTTACTTCCGTACATGCCAAATTTTATTTGCACTTATATCTTAAAAT
ATAATCTTTATTTTATTTGCTTCAACGTCCAAAATTTTAAAAATACTTAC
ACACAATTCCAAAGTTAACAGAAAAAACAGGGAAATATTTCTAATATCAT
GGGTCACAAAACATTCAACTTCCAAATTTTCTCACAATTAAAGTAAAAAA
TTTACTTAAAGATCTGAACACATCAGACCTCGATCTTTTGTTTTCCTTGG
TATTATTTTTTTCATTCTTTTGTGTACTCATTTTAAAAAAAATCAGGAGA
AAATTAAATTATTCTTTCCTCAGGTCT

TTTCTTTTTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCCCAGAGCTTG
TTAATATGTGACTTCATTCTTATTTTACTAATTAAAATCAAAAGCCTCTT
CTAACATAGATGACACCAATAGCTTGAGGCAGGCCTTGGGTAAGTCTAAC
TAATTTATTGATTATGGCTGGTAACAGATAGTGTGAAAAGAATTTAAGAG
GTTTGATATATTGTCATGTAATGGGCGTGTCCCATTTTCTTCTTCAATTA
TTTATCAGTGTTGTTAATCTAGTCATTTATGTAAAATGCATATATTTTGT
TACATTTTTAGGGGAATGTGTTATGAATGCCGCACGGTTTGCCTGTGGAC
ATCATAGGAAACCATTGTAGTCTTTGGTCTCCCCCCTTTATGTGTTATCT
TCCCGCATCTCTACCTCTTGTTTTCTAGCTTCCCCCTTTAGCAACTTTTT
TTTCTGCGCCATCCTTCTCCATTTACACCATCATTATTTACTTATCAATA
CCCCATACTTTTATCCTTCTACAATAATCCTTTTAATCGCCCTGTTATTC
TCCCTCTTACGGGTCTGTCATTCACTTACCCTATCCTTTATAACCCATTT
CTCCTTTATGTTTTTTTTATCCCTACCCGACTATCCCCTCTACTCCTTAA
CATGTTAAATCTCTCTCTTTTTTTCGCCCCCGCTTATTTTGTTTCTTTCT
GTCAAGTAATTCAGCTCTTTTCCCCCCCCTCTTCTTCCCATGTACCCGTC
CACATCTTCTCTCTTGTAATCCTACGCCACCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_b08.b1 MSMg01no199_b08.b1 CHROMAT_FILE:
MSMg01no199_b08.b1 PHD_FILE: MSMg01no199_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:31 2005
         (682 letters)



>mm_chr2_86713991_86715072
          Length = 1082

 Score = 1272 bits (658), Expect = 0.0
 Identities = 673/678 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaattgaactcaatacaaattcacattgtgtctgtgatcacgttaaaattttgag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaattgaactcaatacaaattcacattgtgtctgtgatcacgttaaaattttgag 264

                                                                       
Query: 65  acaccaaattatcttagttatgatcttaattcaggaaatttaaataaaatatcatgcatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaccaaattatcttagttatgatcttaattcaggaaatttaaataaaatatcatgcatt 324

                                                                       
Query: 125 aaattaaaaaatatagaaaacaacttcaatatgtttccagctcttttctatatcaattaa 184
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaattaaaaaagatagaaaacaacttcaatatgtttccagctcttttctatatcaattaa 384

                                                                       
Query: 185 ctgtaactatattttattaaagtaatagactacattaaaacaaataactatttgaaagat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgtaactatattttattaaagtaatagactacattaaaacaaataactatttgaaagat 444

                                                                       
Query: 245 ggattattatcttctgataatttcaaacacatttttgactaaaattattttattgaaata 304
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggattattttcttctgataatttcaaacacatttttgactaaaattattttattgaaata 504

                                                                       
Query: 305 tgaatcatcactagtgtaatcttcttccatccactctaagcttgccacaaccctgttact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgaatcatcactagtgtaatcttcttccatccactctaagcttgccacaaccctgttact 564

                                                                       
Query: 365 tccgtacatgccaaattttatttgcacttatatcttaaaatataatctttattttatttg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tccgtacatgccaaattttatttgcacttatatcttaaaatataatctttattttatttg 624

                                                                       
Query: 425 cttcaacgtccaaaattttaaaaatacttacacacaattccaaagttaacagaaaaaaca 484
           |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 625 cttcaacgtccacaattttaaaaatacttacacacaattccaaagttgacagaaaaaaca 684

                                                                       
Query: 485 gggaaatatttctaatatcatgggtcacaaaacattcaacttccaaattttctcacaatt 544
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 685 gggaaatatttctaatatcatgggtcacaaaacattcatcttccaaattttctcacaatt 744

                                                                       
Query: 545 aaagtaaaaaatttacttaaagatctgaacacatcagacctcgatcttttgttttccttg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaagtaaaaaatttacttaaagatctgaacacatcagacctcgatcttttgttttccttg 804

                                                                       
Query: 605 gtattatttttttcattcttttgtgtactcattttaaaaaaaatcaggagaaaattaaat 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gtattatttttttcattcttttgtgtactcattttaaaaaaaatcaggagaaaattaaat 864

                             
Query: 665 tattctttcctcaggtct 682
           ||||||||||||||||||
Sbjct: 865 tattctttcctcaggtct 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no199_b08.g1 MSMg01no199_b08.g1 CHROMAT_FILE:
MSMg01no199_b08.g1 PHD_FILE: MSMg01no199_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:31 2005
         (291 letters)



>mm_chr2_86829946_86830636
          Length = 691

 Score =  540 bits (279), Expect = e-158
 Identities = 288/291 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgccccagagcttgttaatatgtgacttcattcttattttactaattaaaatcaaaagcc 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 491 tgccccagagcttgttaatatgtgacttcattctttttttactaattaaaatcaaaagcc 432

                                                                       
Query: 61  tcttctaacatagatgacaccaatagcttgaggcaggccttgggtaagtctaactaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tcttctaacatagatgacaccaatagcttgaggcaggccttgggtaagtctaactaattt 372

                                                                       
Query: 121 attgattatggctggtaacagatagtgtgaaaagaatttaagaggtttgatatattgtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 attgattatggctggtaacagatagtgtgaaaagaatttaagaggtttgatatattgtca 312

                                                                       
Query: 181 tgtaatgggcgtgtcccattttcttcttcaattatttatcagtgttgttaatctagtcat 240
           |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 311 tgtaatggtcgtgtcccattttcttcttcaattatttatcagttttgttaatctagtcat 252

                                                              
Query: 241 ttatgtaaaatgcatatattttgttacatttttaggggaatgtgttatgaa 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttatgtaaaatgcatatattttgttacatttttaggggaatgtgttatgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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