BAC Information

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BAC

Clone NameMSMg01-201D15
Chromosome2 (Build37)
Map Location 82,080,059 - 82,080,323
singlet/doubletsinglet
Overlap geneZfp804a
Upstream geneLOC100040704
Downstream geneLOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292, LOC433440, Fsip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201D15.T7 (MSMg01no201_d15.b1)MSMg01-201D15.TJ (MSMg01no201_d15.g1)
ACCAG386864AG386865
length707723
length of high quality
(start - end)
138 (540 - 677)312 (77 - 388)
definitionCHROMAT_FILE: MSMg01no201_d15.b1 PHD_FILE: MSMg01no201_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:13 2005CHROMAT_FILE: MSMg01no201_d15.g1 PHD_FILE: MSMg01no201_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCCGTTCTCTACCGTGTAACGACGATGCGATTGATCACTAATCCA
AATTCTAGCCCCTATAGTTTAGAGATGCCCTGACTAGGGGATATTGCCTG
AGACAAGTTCCACGTGGAAGCGCGCACTTCAGAAACCTAAGACGTGCTAC
GGACAGTTTAATTAGTAGGAGCTTGTCTCTATGTATCGCTCTTGGATCCG
AGGTTCTGTGATCTGGACACTTTGATGGCTCTGAATATTCGCCCATGTCA
ACGTTGGTCCCTCTGCTTTTGGGGCCTATCTTTGTCTCCTGTGCTTCTCC
CGTCTTTGTGCTCATAACTCCTGCAAGATGAACTCTGGAGATTCAGAACT
GATGCTGGTCCACCCCCACATCGACGACGATCATAATGTGAGGACCTCTG
CGACTGGAGCTTGTCACGACCTGATGCTATTGTTTACTCTCACCCGATTG
CCAGAGAGCTCTGACCACGTGCTGTTCCGATCACCCATGGTTACTGATGC
TCTATTCACATTAGCCAAGAAACATAACCAGCCTGGATGTCCATCAACAG
ACAAGTGAATGAAAAATATGAGGCCAGGGAGATGGTTTAGGGGGTAAAGG
TGCTTGTTACGAAGTCTAGTGACCTCAGTGCAATCCTCAGGGACCACTTG
GTGACCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATCGTAACCAGTCATCTATGAGT
AGCTGTGATACCTGAGACCAAGAGACAATGGTATAGATAGTACATATGTC
AACAACGCTGATGAGGGCCTACTTCATAGCTCATGCAGAAGTCTAAAACA
AAGATACATGCACTGTGTTGTAGTGATTGGTTATGCTATGCTCCAGACCT
ATGCAAAGCTGGAAGTGATCTAGTTTGAATCAGTTTACAGTGTACAGATT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
TTTTTTTTCTCCCCCCCCCCCCCTCCCTCCCTCTCCCTCTCTTCTTCTTT
CTCTCCCCCCCCCCCTTTTAAAAAAAATTTCTTGGGGTGGCGCTCTTTTT
TTTTTTCCTCTCACATTCCCACACTTTATTTTCTCCCCCCGACCTACCTA
TCTGTCTTATCCTTTTCATGCTTGTCTTCATTTNNTTTCTCGCCTCTTTC
TTTTTTTCCTCCCCCCCCCGCCCCCGCTCTCCCTTTTATTACCCTATTAT
TTTACCAGTTACTAGTTTTATGCCCCCTTTTTTCTCTTCTCTCCCCCCAG
CGTTTTTTTCCCAATCTTTGCCTCTTTTTATTTATATTCGAATCTACTCT
ACTTTTGGTGTTGGTTTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_d15.g1 MSMg01no201_d15.g1 CHROMAT_FILE:
MSMg01no201_d15.g1 PHD_FILE: MSMg01no201_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:13 2005
         (312 letters)



>mm_chr2_82079855_82080566
          Length = 712

 Score =  447 bits (231), Expect = e-130
 Identities = 258/267 (96%), Gaps = 3/267 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gtaaccagtcatctatgagtagctgtgatacctgagaccaagagacaatggtatagatag 64
           |||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 205 gtaaccagtcatctgtgagtagctgtgatacctgagacaaagagacaaaggtatagatag 264

                                                                       
Query: 65  tacatatgtcaacaacgctgatgagggcctacttcatagctcatgcagaagtctaaaaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacatatgtcaacaacgctgatgagggcctacttcatagctcatgcagaagtctaaaaca 324

                                                                       
Query: 125 aagat-acatgcactgtgttgtagtgattggttatgctatgctccagacctatgcaaagc 183
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagatga-atgcactgtgttgtagtgattggttatgctatgctccagacctatgcaaagc 383

                                                                       
Query: 184 tggaagtgatctagtttgaatcagtttacagtgtacagattctctctctctctctctctc 243
           ||||||||||| |||||||||||||||||||  ||||||| |||||||||||||||||||
Sbjct: 384 tggaagtgatccagtttgaatcagtttacagcatacagat-ctctctctctctctctctc 442

                                      
Query: 244 tctctctctctctctctctctctctct 270
           |||||||||||||||||||||||||||
Sbjct: 443 tctctctctctctctctctctctctct 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)