NNNTTGCATTGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCT
ATAAAATCATTATTACCATTTATGAAATCATCAATTTCTCTACATAGCAT
CACTACCCGAAAGTAAAACTTTTTATTGATTCTGCACACCACCTTCCCAA
TGGATGGGCTAATGCTTAGAAATCATTAGGCTATGTGATAGTGACAGGAA
AAGGCATATCAACAGCAAGAAGCAATCCTGGGATGAAGTCTCTAAGGATC
CTGCATCTCAGAGCTTACCCCTCACAAGCCATGCAAATCAGTGGACCTTC
TCCAGAAAAGCCTCTTGCTTGCCTTAGCTTTTGCTAGATGGCTTCTGACA
TGTATAAATTCAGTCTTTTCAGTCTGACCTTGGAGATTTGAGATCACATT
TAGTTTTTCTTAATTTTTAAGTTGTAAGTCAAAGCACAGACAATAATATA
AAGCACACAAGGCAAACACATGGCAGAACATGTTACTTCGAGGCAAGGTT
TTGTAATTATAGCACAGGTTAGGAAACAATTTTGATATCTATCCTGGAAA
CTATTCCACATGTGGCAATGCTCACCAGCCTCTGTCTCCCTGATGCTTGG
AAGATTTTACACTGATTCCCCCTTACATCCTCCCACATGGTTATTTTAAC
TTTGCCCATTTCAATTTGGTTTTGATTTTTTAAATTTATAGTTCTCTTAT
CGTCTTTTTATTTTCCTTATATTTTGTTGAATAACTGTGTTATGCATAGT
CTTTGTCTGTGAATACATTCCTGTTTTTGATAATTGTTATCTCTTTTATT
ATTTCTCATTTTTTTGTTTGTTTTTATCTTATGTTATTATGTTTATTCTT
TTTTTTTATTTTTTTTTTTTTCTTGTCTTTTCTTTCCTTTCTTTTTTATT
TCTTTCTTTTCTTTTCTTCTTTCATCTTTTTTTTTTTTCTTTTCTTTTTT
TTTTTTTTTTTCTTTTCTTCTTCTTTTTTTTTTTGTATTTTTATTTCTCT
TTTATTTTTTATTTTTTTTTTTTATTTTTATTATTTATTTTTTTTCTCTT
TATTTTTATTTTTTTTTTTCCTTTTTTTATTTTTTTTCTTTTTTCTATTT
TTCTTTCTTTTTTTTCTTTTTTTTCTTTTCTATTTTATTTTTCTTTTATT
TTCTTCTCTTTTATTCTTTTTTTTTCTATATTATTTTTTCTTTTATTATT
TTTTTATTTTTTTTTTCTATTTTTATTTTATTTAGTTTA

TTTTGGGCGAGGCGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTTTATTGAGACCATCCTTGCCTGACAACAGGC
AAAATTTATGTGGAACTGAGACTTTCAGTTACCCACCATGTCTCCCACTA
GGGCATCTGATTGACTGTCCCAAGAGCTAGGCAAGCATTCTACATGTGAA
CAAGATTCCCAGCTCTTTTTACCAGTCTCATGAAGTTGTCTAGGCTGATT
TTAAACTTTGATACCCTGCCTTCCCTGTCTCAGCCTTCTAAGGACCTGAG
GTTATAAGTCTACACATCCAAGCTCAGCCAGATCCTTTTATAATTTTCTC
TGCACCTAAAGTTCTCTGTCTAGATGCTTCTAGGAGGAAGCTGTTTTCCT
TAATATTTAGATTGATCTTAATATCAACCAAAAGTAAAGCCTACCCCAAC
TCCCATTACTCATGATATCTAAAATCATGCTGCTTATTTATTTGGTTCCA
AGCCACCCACATTATGAAGAGCACAATGGCCAGTCGATCAAATTTTAGGG
GAGCAGATTACCTCTTCAAACCTCTGAGGATACTGGCATGCACATGCATA
CACATAAATGAACATACACACAACAGAGAGAGAGAGAGACTCAATTAAAA
GGAAGATATAGATAAGTATTTTAAAATGCATGTAGTTAAGTTATACAAGA
TGTTTTGACGCACATATGTAAGTTAATGACTATAGTCTTATTAATTAACA
TCTTTCTCCTCACATTCATTTCTTTTATGAAGCATTCCGTATAAAGTGCT
TTTAATTTATACTTTATGTCTTACTTTAAAATTGTAGCCTCCCTCTATCA
TTTTGTCTTTTGTTTCTCTAACTATTGTTTTCTTTTCTGTTAATTCTCTG
TACCCTTTTCTTGATTCCTTTAATTTTTCTTTTTTCGTTATTCATTCTAT
TACTGTTTTNCTTTTTATTTTATTATTTCTCTCTTCTTTCTACTTTTTTT
TTTATTCCTTTCTTTTTTTTTTTTTTATTCTATTTTTCTTTATTTTTCTC
TATTTTTCTCTTTTTTTTCTTTCTTTTTCTTTTTTATTTCTTTTATATTT
TGTTATTTTCTTATTTTATCTTTGTTCTTTTTTTTTTCATTTTCTACTTA
TTTCTTTTCTTTATTTTCATTTTATTCTTCATATCCTCTTGTAATCTACA
TCTTATCCTCTTCTTTTTT

Query= MSMg01no201_g18.b1 MSMg01no201_g18.b1 CHROMAT_FILE:
MSMg01no201_g18.b1 PHD_FILE: MSMg01no201_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:35 2005
         (621 letters)



>mm_chr2_122811881_122812901
          Length = 1021

 Score = 1139 bits (589), Expect = 0.0
 Identities = 613/621 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcatcaatttctctacatagcatcactacccgaaagtaaaactttttattgattctgc 60
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 201 aatcatcaatttctctacatagcatcactacatgaaagtaaaactttttattgattctgc 260

                                                                       
Query: 61  acaccaccttcccaatggatgggctaatgcttagaaatcattaggctatgtgatagtgac 120
           | |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaaccttcccaatggatgggctaatgcttagaaatcattaggctatgtgatagtgac 320

                                                                       
Query: 121 aggaaaaggcatatcaacagcaagaagcaatcctgggatgaagtctctaaggatcctgca 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaaaaggcatgtcaacagcaagaagcaatcctgggatgaagtctctaaggatcctgca 380

                                                                       
Query: 181 tctcagagcttacccctcacaagccatgcaaatcagtggaccttctccagaaaagcctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcagagcttacccctcacaagccatgcaaatcagtggaccttctccagaaaagcctct 440

                                                                       
Query: 241 tgcttgccttagcttttgctagatggcttctgacatgtataaattcagtcttttcagtct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcttgccttagcttttgctagatggcttctgacatgtataaattcagtcttttcagtct 500

                                                                       
Query: 301 gaccttggagatttgagatcacatttagtttttcttaatttttaagttgtaagtcaaagc 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 gaccttggagatttgagatcacattgagtttttcttaatttttaagttgtaagtcaaagc 560

                                                                       
Query: 361 acagacaataatataaagcacacaaggcaaacacatggcagaacatgttacttcgaggca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagacaataatataaagcacacaaggcaaacacatggcagaacatgttacttcgaggca 620

                                                                       
Query: 421 aggttttgtaattatagcacaggttaggaaacaattttgatatctatcctggaaactatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggttttgtaattatagcacaggttaggaaacaattttgatatctatcctggaaactatt 680

                                                                       
Query: 481 ccacatgtggcaatgctcaccagcctctgtctccctgatgcttggaagattttacactga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccacatgtggcaatgctcaccagcctctgtctccctgatgcttggaagattttacactga 740

                                                                       
Query: 541 ttcccccttacatcctcccacatggttattttaactttgcccatttcaatttggttttga 600
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 741 ttcccccttacatcctcccacatggttattttagctttgcccatttcaatttggttttga 800

                                
Query: 601 ttttttaaatttatagttctc 621
           |||||||||||||||||||||
Sbjct: 801 ttttttaaatttatagttctc 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no201_g18.g1 MSMg01no201_g18.g1 CHROMAT_FILE:
MSMg01no201_g18.g1 PHD_FILE: MSMg01no201_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:35 2005
         (564 letters)



>mm_chr2_122892125_122893088
          Length = 964

 Score = 1052 bits (544), Expect = 0.0
 Identities = 559/564 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaccatccttgcctgacaacaggcaaaatttatgtggaactgagactttcagttaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 764 agaccatccttgcctgacaacaggcaaaatttatgtggaactgagactttcagttaaata 705

                                                                       
Query: 61  ccatgtctcccactagggcatctgattgactgtcccaagagctaggcaagcattctacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ccatgtctcccactagggcatctgattgactgtcccaagagctaggcaagcattctacat 645

                                                                       
Query: 121 gtgaacaagattcccagctctttttaccagtctcatgaagttgtctaggctgattttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gtgaacaagattcccagctctttttaccagtctcatgaagttgtctaggctgattttaaa 585

                                                                       
Query: 181 ctttgataccctgccttccctgtctcagccttctaaggacctgaggttataagtctacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ctttgataccctgccttccctgtctcagccttctaaggacctgaggttataagtctacac 525

                                                                       
Query: 241 atccaagctcagccagatccttttataattttctctgcacctaaagttctctgtctagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 atccaagctcagccagatccttttataattttctctgcacctaaagttctctgtctagat 465

                                                                       
Query: 301 gcttctaggaggaagctgttttccttaatatttagattgatcttaatatcaaccaaaagt 360
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 464 gcttctaggaggaagctgttttccaaaatatttagattgatcttaatatcaaccaaaagt 405

                                                                       
Query: 361 aaagcctaccccaactcccattactcatgatatctaaaatcatgctgcttatttatttgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aaagcctaccccaactcccattactcatgatatctaaaatcatgctgcttatttatttgg 345

                                                                       
Query: 421 ttccaagccacccacattatgaagagcacaatggccagtcgatcaaattttaggggagca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttccaagccacccacattatgaagagcacaatggccagtcgatcaaattttaggggagca 285

                                                                       
Query: 481 gattacctcttcaaacctctgaggatactggcatgcacatgcatacacataaatgaacat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gattacctcttcaaacctctgaggatactggcatgcacatgcatacacataaatgaacat 225

                                   
Query: 541 acacacaacagagagagagagaga 564
           ||||||||||||||||||||||||
Sbjct: 224 acacacaacagagagagagagaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)