CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAAGATATATCAAGCTGGTTGACAATACTTCTATCTTTGAGAGTATT
GGAAGAAATAATTGGTATCTGCCTTAGTGGATTTCAAGGTGTTAAGAAGA
CAGGTCCTCAGCATGGGAAGCACTGTCCCAAAGGGTAGAAACCCTGATTT
CACAAGTAGGAAAGGAGGAAATTCACGGGTATGAGCAAATTTCATTCTTC
TTGAACAGGTGACTTTCTGTGCAAATGTGTTGGCCTTGAGCTTCTAACCA
TAACTTTAGCTTTTGAATATTATTTTACATCTGTGGCTCTGTAGAAATTG
CTAGATTCTTTTTTATGTACTCGCCCCTCCTCCAGCACTCCAACATATTC
TGAGGCTTACAGACCCCCCCACTGAGAAATTTTGATGACAACTTACAGAA
GACCATTTGGGTACTATCCAGTCTCTGATCCTATGAGTTAAACTGACAAA
TGTCTTTATTAGCTCTGCTTCTCTAGTAAACACTACTATAATAGAGAAAG
ATTATGTTAGCATTTTCAAATAATCCATGAAAAATACATCACATTTCCAT
ATTTCACATACAATTCCGTAATACAAACAATTTAAGACATGCTTTTACAA
ACTATACCTTGACTTTGATAAGACTGCAAAAATTGTTTATTATATCCTCT
GTCTTAAAGAGAATCATAATATCTTCTGATATTTTTCTCAT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAAGTGGGTACCCAAATCTGTTTGA
TAAACCCGTGCTCTCAATTTCATCTACACTTTAAAAATTTGTTTTTGTAT
CTCAAGCTTCAGTCTGGTCTTTAAGGCATAAGGGCTGTGCTAGTTTCTAT
TTCTACTTTTGCTTGTGTTTTTCCTTTTTATATGTGGAATGTCAATGTGA
TTAGTTTCTACGTATTTTTAAGGCTATAATTTTATGAACATTTCATCACT
CAGAAGGATGGCTGACACACTAGAACTATCTGATTCAGATACTATAGTGT
TAACTTAGTTACCTGCATTTTAAACTAGCTACATGGAGACAGAACCCTGA
GCATACATACTACCACCCCACCACATGTCATATCTCATAATACATAATTC
TAAATATTTCAGTTAATGAATTGGGCAATGCATTGATTAATTTTTAAGAC
AGTCTCACTATGCAATGTCATCTGGCCTCAAAGTCACTTTCCTCATATCT
CAGCTTCTCAAGGGCTAGGATTACGAGTATCTATCTACCACTTAAGTTAG
ACACACAATATTTTACTCTTCTGAATATAACCTTCTAGTTTCCAGGTCAT
ATGGACTATAAGCTTACTTCTGTAGGACTCAGTATAATATTGTTAAGACT
AGATCAGCTTCATTCTATAAAGAATCCTTTT

Query= MSMg01no203_i14.b1 MSMg01no203_i14.b1 CHROMAT_FILE:
MSMg01no203_i14.b1 PHD_FILE: MSMg01no203_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:43 2005
         (320 letters)



>mm_chr2_40006775_40007494
          Length = 720

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaagatatatcaagctggttgacaatacttctatctttgagagtattggaagaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattcaaagatatatcaagctggttgacaatacttctatctttgagagtattggaagaa 456

                                                                       
Query: 65  ataattggtatctgccttagtggatttcaaggtgttaagaagacaggtcctcagcatggg 124
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ataattggtatctgtgttagtggatttcaaggtgttaagaagacaggtcctcagcatggg 396

                                                                       
Query: 125 aagcactgtcccaaagggtagaaaccctgatttcacaagtaggaaaggaggaaattcacg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aagcactgtcccaaagggtagaaaccctgatttcacaagtaggaaaggaggaaattcacg 336

                                                                       
Query: 185 ggtatgagcaaatttcattcttcttgaacaggtgactttctgtgcaaatgtgttggcctt 244
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ggtatgagcgaatttcattcttcttgaacaggtgactttctgtgcaaatgtgttggcctt 276

                                                                       
Query: 245 gagcttctaaccataactttagcttttgaatattattttacatctgtggctctgtagaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gagcttctaaccataactttagcttttgaatattattttacatctgtggctctgtagaaa 216

                      
Query: 305 ttgctagattc 315
           |||||||||||
Sbjct: 215 ttgctagattc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no203_i14.g1 MSMg01no203_i14.g1 CHROMAT_FILE:
MSMg01no203_i14.g1 PHD_FILE: MSMg01no203_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:43 2005
         (333 letters)



>mm_chr2_39921980_39922712
          Length = 733

 Score =  634 bits (328), Expect = 0.0
 Identities = 331/332 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagtgggtacccaaatctgtttgataaacccgtgctctcaatttcatctacactttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagtgggtacccaaatctgtttgataaacccgtgctctcaatttcatctacactttaaa 260

                                                                       
Query: 61  aatttgtttttgtatctcaagcttcagtctggtctttaaggcataagggctgtgctagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttgtttttgtatctcaagcttcagtctggtctttaaggcataagggctgtgctagtt 320

                                                                       
Query: 121 tctatttctacttttgcttgtgtttttcctttttatatgtggaatgtcaatgtgattagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctatttctacttttgcttgtgtttttcctttttatatgtggaatgtcaatgtgattagt 380

                                                                       
Query: 181 ttctacgtatttttaaggctataattttatgaacatttcatcactcagaaggatggctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctacgtatttttaaggctataattttatgaacatttcatcactcagaaggatggctga 440

                                                                       
Query: 241 cacactagaactatctgattcagatactatagtgttaacttagttacctgcattttaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacactagaactatctgattcagatactatagtgttaacttagttacctgcattttaaac 500

                                           
Query: 301 tagctacatggagacagaaccctgagcataca 332
           ||| ||||||||||||||||||||||||||||
Sbjct: 501 tagttacatggagacagaaccctgagcataca 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)