BAC Information

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BAC

Clone NameMSMg01-203K18
Chromosome2 (Build37)
Map Location 154,222,567 - 154,317,028
singlet/doubletdoublet
Overlap geneSnta1, Cbfa2t2
Upstream geneAsxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1
Downstream geneApba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203K18.T7 (MSMg01no203_k18.b1)MSMg01-203K18.TJ (MSMg01no203_k18.g1)
ACCAG388348AG388349
length783755
length of high quality
(start - end)
160 (45 - 204)283 (76 - 358)
definitionCHROMAT_FILE: MSMg01no203_k18.b1 PHD_FILE: MSMg01no203_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:54 2005CHROMAT_FILE: MSMg01no203_k18.g1 PHD_FILE: MSMg01no203_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,222,567 - 154,222,721)(154,316,746 - 154,317,028)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCTCTATCTGCTTATGGACTGCAGATGCACTGTGACCTGTGACCT
GTGAACTTCAACACTTGCTGCCACGACTTCAGTGCCACGATGGATTGTAC
AGATCCTTCCTTTAATTGTTTGTTTGTTTGTTTGTTTGGGGGTATGGGGC
ATGTTTNNNNTTCTTNCTTTTTCCCTTTTTCTTTTCTTCTCCTTTTCCTC
CTCTTTCTTCCATCATTCTTCCTTCTCCCCTTTTCCTCTCTCCCCTTCTT
CCTTTCCCTCCCATCTTTTTTTTTTCCCCCTTCATCTCCTTCCTTCCACC
CAACTTTTTAAGGTAGCTTCCCAAACAAGGACCCCTAGTGTTTTTGTTTT
GTTCTGTTTTGTTTTTTGCCCCCCCCCCAAAAAAAAAAAAAATAATTTTG
CGTTGTGCGGGTTTTTTCCTTCCCCCTTTTCCTTCCCTTCCCCCCCCCTC
TCCTTTTTTTTTTTCTCCCCCCCTTTCCCCCTCTACCCCCTTTATCCTCT
TCTTCCCCCCCTACTCCCCTTTTATTCTCATCCTTTCCCTTTACCTTATC
TTTTCTTTTTCCTTCCCCTCCTTTTTCTCTCCTCCCTCCTATTATTTTTT
TTTTCCCCCCTTTTACTTTCCCTTTCCCTTTTTTTTCTCCCTTCTTTTTT
ACTTTCATCCCTACTTCTTTTTTTTTTTCCCCCTTTTTTCTTCTTTTTCC
CCCCCCCTTCTTACCTTCTTTTTCTTCTTTTTT
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCGGGTTCTTACAACAAAATATAA
ACGTTTTGCCTTGGTTTACTGATGCCAGACCTGATGTTTCTCTATGTATC
CTAAGCTAGGCTTGAACTTATACTATGTAGCCCAGGCTGATCTGGAACTT
GTAGCAATCTTCCACCATCAGTCTCTAAAATGCTGGGGTTAGAGTACTCT
CCAGGGTCTTTTAAACAGTTTCTAAAGTTTGGTCTGGAATTGTTGGAGCA
ATCTAGAGCCCCTTTGTGGAAGAGGATAGGCAAGTGGGGAGGAGAGAAAA
CTGAAAAGGTTTTTTTTTGTCCCCCCCCCCCCCCTTCTATAGTCATTCCC
ATTAACAGCATTATCCCCCCCCTCTAAAAAAAAAAAGCAGAGACGTGGAG
TGGTGTTCATCAGTACCCCTATCGTTTTCCCGGTTTAACCTACATATTTC
CTCCCTCTTCGCCTGCCTCAGCTTCTTCCCCTATTTCGGCCTTCCTGTCT
TACTTTTCTCCCCTTTTTTTTCCAACCCTCCCTTCACTACTTTCCCTTTG
CTTTATCCGATGCCTTATTTTTCCCCGCTTTTCTTTTTCCCCCTTGACTG
ACTTTTTTTTCCTTGTTATATTTCCTTCCCTGCCTCTTTCTCTTTCCTTT
TGCTTTTCTCCTCCCTATTTATCCCCCTTCCCTCCCTTCTCCTCTTTCTC
CCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_k18.b1 MSMg01no203_k18.b1 CHROMAT_FILE:
MSMg01no203_k18.b1 PHD_FILE: MSMg01no203_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:54 2005
         (160 letters)



>mm_chr2_154222363_154222922
          Length = 560

 Score =  292 bits (151), Expect = 7e-84
 Identities = 154/155 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacctctatctgcttatggactgcagatgcactgtgacctgtgacctgtgaactt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacctctatctgcttatggactgcagatgcactgtgacctgtgacctgtgaactt 264

                                                                       
Query: 65  caacacttgctgccacgacttcagtgccacgatggattgtacagatccttcctttaattg 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caacacttgctgccaggacttcagtgccacgatggattgtacagatccttcctttaattg 324

                                              
Query: 125 tttgtttgtttgtttgtttgggggtatggggcatg 159
           |||||||||||||||||||||||||||||||||||
Sbjct: 325 tttgtttgtttgtttgtttgggggtatggggcatg 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 560
Length adjustment: 8
Effective length of query: 152
Effective length of database: 552
Effective search space:    83904
Effective search space used:    83904
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no203_k18.g1 MSMg01no203_k18.g1 CHROMAT_FILE:
MSMg01no203_k18.g1 PHD_FILE: MSMg01no203_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:54 2005
         (283 letters)



>mm_chr2_154316377_154317059
          Length = 683

 Score =  532 bits (275), Expect = e-155
 Identities = 281/283 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcgggttcttacaacaaaatataaacgttttgccttggtttactgatgccagacctgat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 652 ttcgggttcttacaacaaaatataaacgttttgccttggtttactgatgggagacctgat 593

                                                                       
Query: 61  gtttctctatgtatcctaagctaggcttgaacttatactatgtagcccaggctgatctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gtttctctatgtatcctaagctaggcttgaacttatactatgtagcccaggctgatctgg 533

                                                                       
Query: 121 aacttgtagcaatcttccaccatcagtctctaaaatgctggggttagagtactctccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aacttgtagcaatcttccaccatcagtctctaaaatgctggggttagagtactctccagg 473

                                                                       
Query: 181 gtcttttaaacagtttctaaagtttggtctggaattgttggagcaatctagagccccttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gtcttttaaacagtttctaaagtttggtctggaattgttggagcaatctagagccccttt 413

                                                      
Query: 241 gtggaagaggataggcaagtggggaggagagaaaactgaaaag 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gtggaagaggataggcaagtggggaggagagaaaactgaaaag 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)