Query= MSMg01no204_b14.b1 MSMg01no204_b14.b1 CHROMAT_FILE:
MSMg01no204_b14.b1 PHD_FILE: MSMg01no204_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:31 2005
(369 letters)
>mm_chr2_9833336_9834105
Length = 770
Score = 671 bits (347), Expect = 0.0
Identities = 359/363 (98%), Gaps = 1/363 (0%)
Strand = Plus / Minus
Query: 5 gaattcctactgtatgaccaagcataccttagttcaactcaataaaactctataaaggcc 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gaattcctactgtaagatcaagcataccttagttcaactcaataaaactctataaaggcc 508
Query: 65 tcgcatggctggctgcgtatgcttataaccccactgaggggcatggaccaaggcaagcag 124
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tcgcatggctggctgtgtatgcttataaccccactgaggggcatggaccaaggcaagcag 448
Query: 125 aaccccagaggtcactgggtggccagtctagccaaaatagcaagccacatcaatgtcctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaccccagaggtcactgggtggccagtctagccaaaatagcaagccacatcaatgtcctt 388
Query: 185 ctctggatttcacactggtatgcaggcatgcatacacacaaacacacacaagccatacat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctctggatttcacactggtatgcaggcatgcatacacacaaacacacacaagccatacat 328
Query: 245 acacc-aaaaaaagaaagaaaaaaaaatagaacattttggcagagtgtgtggtagggcat 303
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 acaccaaaaaaaagaaagaaaaaaaaatagaacattttggcagagtgtgtggtagggcat 268
Query: 304 gtgcttgacatacccaaagaagccctgggttaaattatttatataatactgtcatgtcat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gtgcttgacatacccaaagaagccctgggttaaattatttatataatactgtcatgtcat 208
Query: 364 gtt 366
|||
Sbjct: 207 gtt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 770
Length adjustment: 9
Effective length of query: 360
Effective length of database: 761
Effective search space: 273960
Effective search space used: 273960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no204_b14.g1 MSMg01no204_b14.g1 CHROMAT_FILE:
MSMg01no204_b14.g1 PHD_FILE: MSMg01no204_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:31 2005
(493 letters)
>mm_chr2_9782488_9783381
Length = 894
Score = 890 bits (460), Expect = 0.0
Identities = 484/494 (97%), Gaps = 5/494 (1%)
Strand = Plus / Plus
Query: 1 tatggctccgtggaggtggtagagaaacacacacacacacaaacacacacacacacacac 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 205 tatggctccgtggaggtggtagagaaacacacacacac----acacacacacacacacac 260
Query: 61 acacacacacacacacacacacggcagttcatggagatcttgtggcactgtgtggtcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacacacacacacacacacacggcagttcatggagatcttgtggcactgtgtggtcaga 320
Query: 121 ttgctttaccaagtagtgatgacaccctgctaggacagctgaaatagactttgcgctgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgctttaccaagtagtgatgacaccctgctaggacagctgaaatagactttgcgctgtc 380
Query: 181 tacactgtgggcttgctgaggctcccacatcatcaagtatcatggacactcttagagagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacactgtgggcttgctgaggctcccacatcatcaagtatcatggacactcttagagagc 440
Query: 241 tgcaagttgtagcccagaaaatgcccacaccggctatggggatacgtggagaggctacta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcaagttgtagcccagaaaatgcccacaccggctatggggatacgtggagaggctacta 500
Query: 301 aacgctaatattccagtcccaccagattgtaaccaaccgaaaacccctctaactcctctg 360
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 501 aacgctaatattccagtcccaccagattgtaaccaaccgaaagcctttctaactcctctg 560
Query: 361 ccctgttatttgaaagcagggtttggtttaactgctgctaatcctgtgtgtaccatggcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccctgttatttgaaagcagggtttggtttaactgctgctaatcctgtgtgtaccatggcc 620
Query: 421 tcgggaat-gggggagaagagcaggttctccttaggaggccagggttgcttcgtgctggg 479
|| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaggaatcgggggagaagagcagattctccttaggaggccagggttgcttcgtgctggg 680
Query: 480 caatcctgaggggg 493
||||||||||||||
Sbjct: 681 caatcctgaggggg 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 80
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 894
Length adjustment: 10
Effective length of query: 483
Effective length of database: 884
Effective search space: 426972
Effective search space used: 426972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
