TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTCTAAAATTCCTTTATTTTTATGTAAATATTTTATCAAATACT
TGGTTTCACTTCCATATATAAATAACTAAAAATATAAATTTAAAATTTTC
TATATCAGAAGAACTTTGTAACATAATAAATTACCATTCACAGATATCTA
TCTATGTTCTTTGAAACCAGATTTAAATAGTGACATACATTGAAGTATAG
CTTACTATACTGTCATACTTATAAAAAATACCATAAAATTGACATGCAAT
GAAATTCAAAGATTTTTAAAGTAGCTGCAACTTACAGTGATTTGACTTGT
GACTTTCCAAGTTCATAACTGAGCAAGAGCAGCATTCATTAAGTAGAAAC
CCTATTTCAATTTTTTGAACCCCCAACTTTTCTTTGTTAATGATATAATA
GTCTGATGTTGGGCAATGGCAGCCAGCAGCAACTGCCAATCAGCCACACA
ATCCAATTGAACAATTGATGCTCTACAGGGCAGCAGGCTGCTAAACCATG
GTGTTCTATTAGGTGAAGTGTATTGTATTACATGCGTTTTCAAATTAGGG
TAATTTCTGTGGCTTCATTGGCAAGTAGCACCTGTTCTACACACAGGCAC
ACCTGTTTGTTATTTGCTGAGTTTAGAAGATGAACACACACCACCTAAGA
TAGGGGATGTTTCCATAATACTGATAGTACTTTATGAT

CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCATAGGAAGACCAACAATAT
CAACTAGCTAGACAGCTCAGAGATCCAAGCCACTAAAACCACCAACCAAA
AGTATATATGAGTCGGTCTATGGCTCCCTCTACATATGTAGCAGAGGACT
GCCTTATTTGGTGTCAGTGGGAGGGGAGGCACATGGCTCTATGGATGGTT
ATTGCCCCAAGAAAAGGGATGCTTAGAGGGGTGAACGGGGAGTGGGTGGG
GGAGCNTCCTTCCACAGATGCCGCATTTTTTATTTCGCTTCCATATCTTT
TCCCAACTTCTCATTCTTTTTTTCTCCCCCTCCCTCTTCTGCCTTTCTTT
TTCTCGACTTTTTTGACTCCCCCCCCCCCAAAAAAAAAATATAGCTTTTT
TTCTTCCCCTCCTTACACTCTCTTTTTCTTTCTCCCTCTCCCCCCTTTTA
TTTTTATTCTTTATTTTCCCATTTTTTCCCTTTCCCTTCCCCCCTTTTTC
GCCCCTTTTTTTATCAGTTCCCTCCCCCTCCGCTTTTTCTCCCTCCCTTT
TCTACCCTTTCCTCTTTTTTTCCTCCTTCCTTATCCTTCTATTGTATTAT
ACATTCCCCTTTTCTTTCTCTTGTTCGTTTTTTTTCTTTCCTTTAGCTCT
CTTCTCTTTTTCCTCCTCTTCCTTTACTCTCTGTTTTATCCCCTCTCTTC
CCTTTTCTTTTTCTCCAATTTG

Query= MSMg01no206_i24.b1 MSMg01no206_i24.b1 CHROMAT_FILE:
MSMg01no206_i24.b1 PHD_FILE: MSMg01no206_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:46 2005
         (653 letters)



>mm_chr2_141318136_141319188
          Length = 1053

 Score = 1154 bits (597), Expect = 0.0
 Identities = 637/655 (97%), Gaps = 10/655 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctct--aaaattcctttatttttatgtaaatattttatcaaatacttggtttc 62
           |||||||||||  |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctctctaaaaaaatcatttatttttatgtaaatattttatcaaatacttggtttc 262

                                                                       
Query: 63  acttccatatataaataactaaaaatataaatttaaaattttctatatcagaagaacttt 122
           |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 263 acttccatatataaataaataaaaatataaattttaaattttctatatcagaagaacttt 322

                                                                       
Query: 123 gtaacataataaattaccattcacagatatctatctatgttctttgaaaccagatttaaa 182
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 323 gtaacataataaattaccattcacagatatctatctatgttctttgaaaccagattgaaa 382

                                                                       
Query: 183 tagtgacatacattgaagtatagcttactatactgtcatacttataaaaaataccataaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tagtgacatacattgaagtatagcttactatactgtcatacttataaaaaataccataaa 442

                                                                       
Query: 243 attgacatgcaatgaaattcaaagatttttaaagtagctgcaacttacagtgatttgact 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 attgacatgcaatgaaattcaaagatttttaaagtagctgcaacttacagtgatttgact 502

                                                                       
Query: 303 tgtgactttccaagttcataactgagcaagagcagcattcattaagtagaaaccctattt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgtgactttccaagttcataactgagcaagagcagcattcattaagtagaaaccctattt 562

                                                                       
Query: 363 caattttttgaaccccc----aacttttctttgttaatgatataatagtctgatgttggg 418
           |||||||||||||        |||||||||||||||||||||||||||||||||||||||
Sbjct: 563 caattttttgaac----tttgaacttttctttgttaatgatataatagtctgatgttggg 618

                                                                       
Query: 419 caatggcagccagcagcaactgccaatcagccacacaatccaattgaacaattgatgctc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 caatggcagccagcagcaactgccaatcagccacacaatccaattgaacaattgatgctc 678

                                                                       
Query: 479 tacagggcagcaggctgctaaaccatggtgttctattaggtgaagtgtattgtattacat 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 679 tacagggcagcaggctgctaaaccatggtgttctattaggtgaagtgtattgtattaaat 738

                                                                       
Query: 539 gcgttttcaaattagggtaatttctgtggcttcattggcaagtagcacctgttctacaca 598
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 739 gcgttttcaaattagggtaatttctgtggcttcattggcaagtagcacctgttctataca 798

                                                                  
Query: 599 caggcacacctgtttgttatttgctgagtttagaagatgaacacacaccacctaa 653
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 799 caggcacacctgtttgttatttgctgagtttggaagatgaacacacaccacctaa 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)