Query= MSMg01no208_o17.b1 MSMg01no208_o17.b1 CHROMAT_FILE:
MSMg01no208_o17.b1 PHD_FILE: MSMg01no208_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:53 2005
(311 letters)
>mm_chr2_71638048_71638758
Length = 711
Score = 513 bits (265), Expect = e-150
Identities = 288/305 (94%), Gaps = 15/305 (4%)
Strand = Plus / Minus
Query: 5 gaattccaacttctatcgtaaacgcattaagtgtaactgcactgccactacgtcagatac 64
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 376 gaattccaacttctatcgtaaatgcattaagtgtaactgcactgccactacgtcagatac 317
Query: 65 agtagcaggtaataagtaattcaacaccctatgcgcaatcaaagtttagcttgccaatac 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agtagcagataataagtaattcaacaccctatgcgcaatcaaagtttagcttgccaatac 257
Query: 125 cttagggtcatttatcatttctaaacaacacagaacaagaagtaccagggtggggacctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cttagggtcatttatcatttctaaacaacacagaacaagaagtaccagggtggggacctg 197
Query: 185 ggagatggctcagtgggtaaagtgcttgctgctcagtcatgagaacccgggtcccgatac 244
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 196 ggagatggctcagtgggtaaagtgcttgctgctca---------------gtcccgatac 152
Query: 245 ccagcgctcacacacagccaggtgctgtggattccagcagcagtaggggagtggagacag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ccagcgctcacacacagccaggtgctgtggattccagcagcagtaggggagtggagacag 92
Query: 305 cagct 309
|||||
Sbjct: 91 cagct 87
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space: 212004
Effective search space used: 212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no208_o17.g1 MSMg01no208_o17.g1 CHROMAT_FILE:
MSMg01no208_o17.g1 PHD_FILE: MSMg01no208_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:53 2005
(280 letters)
>mm_chr2_71594879_71595558
Length = 680
Score = 528 bits (273), Expect = e-154
Identities = 276/277 (99%)
Strand = Plus / Plus
Query: 1 aaaaggaaatggccagggaaaggcaaaggtgagataagaactcagtaggctgtcttttca 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 aaaaggaaatggccagggaaaggcaaagatgagataagaactcagtaggctgtcttttca 260
Query: 61 caggaggacctaagacatggacgagcagagtgtcccgattggatgccaggtctgtactgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggaggacctaagacatggacgagcagagtgtcccgattggatgccaggtctgtactgg 320
Query: 121 gacaactggcagcatgccatccttcctgcaccaacttacttccccacactgtcctccatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacaactggcagcatgccatccttcctgcaccaacttacttccccacactgtcctccatt 380
Query: 181 cccatgggaagctcagagttcccacacgtcctcagccaggaagctcagggtggacacatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccatgggaagctcagagttcccacacgtcctcagccaggaagctcagggtggacacatc 440
Query: 241 tgtgtgtggcagggtgtggctgataagcaccagctgc 277
|||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgtgtggcagggtgtggctgataagcaccagctgc 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
