BAC Information

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BAC

Clone NameMSMg01-209B01
Chromosome2 (Build37)
Map Location 166,954,405 - 166,954,638
singlet/doubletsinglet
Overlap geneKcnb1
Upstream geneSulf2, LOC670775, Ppia-ps2_2197.1, BC067047, Trp53rk, Arfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950
Downstream genePtgis, LOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik, Pard6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209B01.T7 (MSMg01no209_b01.b1)MSMg01-209B01.TJ (MSMg01no209_b01.g1)
ACCAG391739AG391740
length709709
length of high quality
(start - end)
417 (43 - 459)234 (131 - 364)
definitionCHROMAT_FILE: MSMg01no209_b01.b1 PHD_FILE: MSMg01no209_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:04 2005CHROMAT_FILE: MSMg01no209_b01.g1 PHD_FILE: MSMg01no209_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAGAGGATCCGC
GGAATTCACTTCACTTCCCTTGAGCTATAAACCAGATGTTAACTGTCAAA
GGCTGTCGAGTGTCTGAGTGTCCTCCCCAGCGAGAGTCCTTGTCTTAGTC
ACGGTTTCCATTCCTGCACAAAGCATCATGACCAAGAAGCAAGTTGGGGA
GGAAAAGGTTTATTCAGCTTACACTTCCACATTGCTGTTCATCACCAGAG
GAAGTCAGGACTGGAACTCAAGCAGGCCAGGAAGCAGGAGCTGATTCAGA
GGCCACGGAGGGATGTTACTTACTGACTTGCTTCCCCTGGCTTGCTCAGC
CTTCTTTCTTATAGAACCCAAGACTACCAGCTCATGGATGTTACCACCCA
CAATGGGCCGGGCCCTCCCCTCTTGCCCACTAATTGAGAAAATGCCTTAC
AGCTGAATCTCATGCAGGCATTTTCTCAAAGGAGGCTCCTTTCTCTGTGA
TAACTCCAGCTTGTGTCATGTTGACACACAAAATCAGCCAGTACAGTCCT
CTAGCTGAGCATCACAGCATCTGTGCTGTGGCTCATACTCTGGCTAGCAG
TGCTGCTTGGGAGACTCACCAGGGAGCTCTACCTGAGGTCGGACCTCATA
ACTGTAGTACAAACAGCGCCTCTTATCGCAGCTTCTTTAGTTGCTCAGCG
TCCCCCATG
CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAGGGCCACACCCATTGCACA
GATGTGAAACTGAGACCCAGATAGCCCAGGGATGCAGGCATGTAGCCCAG
CCACACAGCCAAAGCCACGCCACAGCGGCTCTGCCATAGCAGTCCCCAGC
CTCCCTCCTTTCCTTCTTCGGAAATGGCACTGCTCAGTCTTCCAACAGTT
GCCCTCAGAGCCCTGCTCAGGCTCAGTCTCCCCTGCCTCACTGAAGGAGG
ATGAGGAAGAAAAGTCCCCCACCTCCCCCTCTGGGCTTCAGGGGTGTGGC
AAGAGCTGAGTCTTCTGTTGTCCCCGCACCGCCCCCGACCCAATCCAGAG
GTCCCTCTGCCCCAGGTTTCCCTCCCTGCATCCCATCCACTCCCCTGCCC
CACACTGGGTGAGTTGCAAGGGGCAAGCTCTCTCTGAGGCTGGCTCCACA
TTTAAAATGGGACGGGAGCCATGGCACCACCAGAAAGCAAACAGGAAACC
TCTTGCTGCTTCCAGCTGCCTGCAGTCATTGCTTACGCATCCACTGTACG
CATTTCCCGAAGTGCTCTCGCGCTTTCTGTACCATAGGTGGCGCCCTCGC
GACATATCATTTTCGCCCTGTAGTCCCGGTTCTCAGCCAAAGAACCGATT
CTCGCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_b01.g1 MSMg01no209_b01.g1 CHROMAT_FILE:
MSMg01no209_b01.g1 PHD_FILE: MSMg01no209_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:04 2005
         (234 letters)



>mm_chr2_166954205_166954838
          Length = 634

 Score =  437 bits (226), Expect = e-127
 Identities = 232/234 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatgcaggcatgtagcccagccacacagccaaagccacgccacagcggctctgccatagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 gatgcaggcatgtagcccagccacacagccaaagccacgccacagcgcctctgccatagc 260

                                                                       
Query: 61  agtccccagcctccctcctttccttcttcggaaatggcactgctcagtcttccaacagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtccccagcctccctcctttccttcttcggaaatggcactgctcagtcttccaacagtt 320

                                                                       
Query: 121 gccctcagagccctgctcaggctcagtctcccctgcctcactgaaggaggatgaggaaga 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 gccctcagagccctgctcaggctcaggctcccctgcctcactgaaggaggatgaggaaga 380

                                                                 
Query: 181 aaagtcccccacctccccctctgggcttcaggggtgtggcaagagctgagtctt 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagtcccccacctccccctctgggcttcaggggtgtggcaagagctgagtctt 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)