BAC Information

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BAC

Clone NameMSMg01-209O15
Chromosome2 (Build37)
Map Location 59,486,594 - 59,660,332
singlet/doubletdoublet
Overlap geneTanc1
Upstream geneLOC674940, Upp2, BC062650, Pkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016
Downstream geneWdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6, Rbms1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209O15.T7 (MSMg01no209_o15.b1)MSMg01-209O15.TJ (MSMg01no209_o15.g1)
ACCAG392251AG392252
length733732
length of high quality
(start - end)		310 (46 - 355)282 (76 - 357)
definitionCHROMAT_FILE: MSMg01no209_o15.b1 PHD_FILE: MSMg01no209_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:13 2005CHROMAT_FILE: MSMg01no209_o15.g1 PHD_FILE: MSMg01no209_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,660,027 - 59,660,332)(59,486,594 - 59,486,875)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGCCAGCCAAATCTGTCTCAAACAATGAGGACAGGTCAATCCC
TGCCCTCAGCTTCTTGCCTATCCCCCACCTCTCCAACTTCAAAGGTCCGG
GACTGCTTGGAGTGTGAGCCCCAAGTTCCAACCAGAACTTCAGCCAATCC
ACCAACCACTGGGCCCTGGGGCAAGATTTGCACTGATCCAAACCCTACTT
GAGAGATTCCTAGAGCCAGTGTGTTTCCTACTCTGGGGCATCCTCACTAG
ACAAAACCCTAGCATGTATAAGGGGAGGTGGGAACAAATGCCCACCACTT
ACCAATGTGTCATTTGCACNNAACCAACACCTGCTGGAAGAGGGATAACC
TGTTTTCTTCAGCGCCCCGACACAGAAACTGTCAACCACAGTCTCCATTG
GCCAACACTATTGGATGTGTGGATGTGTGTGTGTGTGTATTNNTTTTTTT
TCCTCCCCCACTATATTTTTTCTCAACCTTCCGCCTCTTTTACCTATCTT
CTATTTTCCCCTTTTATTTTGCTGCCCCAGTTTTTTCCAATTTTTCTTTT
TTACATTATTTTAAAATTATATTTCTATTCTTTTAACTTTTTTTTTTTTT
TTCACATATTTATTATCATCTATCTTCTTCATTCTTCTTATTTCTTTCCT
TCTTACTTTTACTTATATTATTACCCTTTTTTT

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGCAGCCGTCAGATTCTCCGCAGCA
CAGTAGTCAGCTGTAACCTCCAGGTGTAAACAGACCTTCATCAGCATCAT
TGAAAAGCGCTTTGAGGAGCCAGACAGAGCTCTGTGGGACGCCGTCCATC
AAAAAGTCATTTGCTGGAGCCTTGTTTCTGGCTGTGACGTTTTACCCCCG
GTGGCTAGCAGGCTCTGTAGAGCTTTGCCTCAAGGAGAGGTGGAGGGTAT
CTCCGTTCATTTGGAGTCTGCTTTCAACAGTCTCCTTTGCTTTTCGCCAG
CTGAGACTTTTTTTATAGCCCCCGTCAACCCTTGCCTTTAAAACAGGACT
AAAGTAGCAGTTACTAACCACCCCTTCATTTTGTAAAAGAATTGTGGCTA
ATTTGGGGGCTATTACTCAGTGGTAAAATACATATCCTAGCATGGATGAG
CCTCTGGGTTGACTCCAGCTCCCTGCACCCCCAGGGCTAATGTTATAATG
ACTTAATCTTGGAATTAGTTAGTGGGCTTTTGCAAAAGGACCTCTGTTGT
TGCTGTGAACCTCAGTCTCCTCAGCCTGGATCTCTCATCCCTGACACAGA
GAATGGATTTAATATAGCTGTGACAGGCACAAGGAGGTGATGCTGCCTGA
CCTGTTCAAAGATGCATAACTGGTCGCCGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_o15.b1 MSMg01no209_o15.b1 CHROMAT_FILE:
MSMg01no209_o15.b1 PHD_FILE: MSMg01no209_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:13 2005
         (310 letters)



>mm_chr2_59659823_59660532
          Length = 710

 Score =  561 bits (290), Expect = e-164
 Identities = 302/306 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggccagccaaatctgtctcaaacaatgaggacaggtcaatccctgccctcag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaattccaggccagccaaatctgtctcaaacaatgaggacaggtcaatccctgccctcag 451

                                                                       
Query: 65  cttcttgcctatcccccacctctccaacttcaaaggtccgggactgcttggagtgtgagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 cttcttgcctatcccccacctctccaacttcaaaggtccgggactgcttggagtgtgagc 391

                                                                       
Query: 125 cccaagttccaaccagaacttcagccaatccaccaaccactgggccctggggcaagattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cccaagttccaaccagaacttcagccaatccaccaaccactgggccctggggcaagattt 331

                                                                       
Query: 185 gcactgatccaaaccctacttgagagattcctagagccagtgtgtttcctactctggggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gcactgatccaaaccctacttgagagattcctagagccagtgtgtttcctactctggggc 271

                                                                       
Query: 245 atcctcactagacaaaaccctagcatgtataaggggaggtgggaacaaatgcccaccact 304
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||
Sbjct: 270 atcctcactagacaaaaccctagcatggagaaggggaggtgggaacaaatgcccacctct 211

                 
Query: 305 taccaa 310
            |||||
Sbjct: 210 caccaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no209_o15.g1 MSMg01no209_o15.g1 CHROMAT_FILE:
MSMg01no209_o15.g1 PHD_FILE: MSMg01no209_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:13 2005
         (282 letters)



>mm_chr2_59486394_59487075
          Length = 682

 Score =  522 bits (270), Expect = e-153
 Identities = 279/282 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcagccgtcagattctccgcagcacagtagtcagctgtaacctccaggtgtaaacagac 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcagccgtcagattctccgcagtacagtagtcagctgtaacctccaggtgtaaacagac 260

                                                                       
Query: 61  cttcatcagcatcattgaaaagcgctttgaggagccagacagagctctgtgggacgccgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcatcagcatcattgaaaagcgctttgaggagccagacagagctctgtgggacgccgt 320

                                                                       
Query: 121 ccatcaaaaagtcatttgctggagccttgtttctggctgtgacgttttacccccggtggc 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatcaaaaagtcatttgccggagccttgtttctggctgtgacgttttacccccggtggc 380

                                                                       
Query: 181 tagcaggctctgtagagctttgcctcaaggagaggtggagggtatctccgttcatttgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagcaggctctgtagagctttgcctcaaggagaggtggagggtatctccgttcatttgga 440

                                                     
Query: 241 gtctgctttcaacagtctcctttgcttttcgccagctgagac 282
           |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 gtctgctttctacagtctcctttgcttttcgccagctgagac 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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