BAC Information

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BAC

Clone NameMSMg01-210E16
Chromosome2 (Build37)
Map Location 114,405,479 - 114,405,824
singlet/doubletsinglet
Overlap geneAtpbd4
Upstream geneFmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770
Downstream geneLOC100043219, LOC100043222, LOC100043232, LOC100043236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210E16.T7 (MSMg01no210_e16.b1)MSMg01-210E16.TJ (MSMg01no210_e16.g1)
ACCAG392466AG392467
length756756
length of high quality
(start - end)
347 (382 - 728)639 (77 - 715)
definitionCHROMAT_FILE: MSMg01no210_e16.b1 PHD_FILE: MSMg01no210_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:46 2005CHROMAT_FILE: MSMg01no210_e16.g1 PHD_FILE: MSMg01no210_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGTTAGGCTGCGACAAGGAAATGAGATTTCCAAATGAATGAAAT
CACTGTATACTATAGGTCTGTAAAACATTACACTGGTCTGACCTGTAACA
GTCATACGTCTACCAGGAGCTGATGCGTCACTACCTTTGGTGAGGATAAT
GACACCACTCTAATGGATGAATATGCCTGCTTGATGGAGCACACAGAGGC
TGCTCGGGGCCTTTGCAGTGCCCATAGTTATTATATGGCTTTTAACAATG
CAACATAATTCATTTTCTACTTGAAAACCTCAAGCTACATAACAAAGCAT
AGTATCCAAATTATTATTTAAGACAAAACCACTCTCCCTCAAAGACTTCA
TAACAAAATTGTAACAAATAATCTAAAAATGGGTGTATTTCAAGTTTTAT
AAAAATCAGACAATAAATGTTACACTTTGATGTATAGTTATATATAATTG
TACATTTTAATCTAGCAGTAAGCCTCCAGGGTTTTCTCCTACTTCCATAA
TGATATGCATAGAGTGTAATAATATCTAAAATAATATAATCACTTTTTTT
CTGTGTGAAAAATAAAACCCATAATTGAGAAATGTTATCTTCATGGATAT
AAGTATTAAGCTGCTTGCTAAATGCCTTTTACCATAAATCACAAAAGGAA
ATTCTCTTATTTTATTTATTGAAAGTCTCATGTCATACTCAAAATTCTTA
GTATTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCATCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACGCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGAAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTG
CTAAACACATGAAACTCAAGAAGAATGGAAACTGAAGTGTGGACACTATG
CCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_e16.b1 MSMg01no210_e16.b1 CHROMAT_FILE:
MSMg01no210_e16.b1 PHD_FILE: MSMg01no210_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:46 2005
         (347 letters)



>mm_chr2_114405278_114406024
          Length = 747

 Score =  654 bits (338), Expect = 0.0
 Identities = 344/346 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   tctccctcaaagacttcataacaaaattgtaacaaataatctaaaaatgggtgtatttca 61
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tctccctcaaagacttcataataaaattgtaacaaataatctaaaaatgggtgtatttca 488

                                                                       
Query: 62  agttttataaaaatcagacaataaatgttacactttgatgtatagttatatataattgta 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agttttataaaaatcagacaataaatgttacactttgatgtatagttatatataattgta 428

                                                                       
Query: 122 cattttaatctagcagtaagcctccagggttttctcctacttccataatgatatgcatag 181
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 427 cattttaatctagcagtaagcctccagggttttcccctacttccataatgatatgcatag 368

                                                                       
Query: 182 agtgtaataatatctaaaataatataatcactttttttctgtgtgaaaaataaaacccat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agtgtaataatatctaaaataatataatcactttttttctgtgtgaaaaataaaacccat 308

                                                                       
Query: 242 aattgagaaatgttatcttcatggatataagtattaagctgcttgctaaatgccttttac 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aattgagaaatgttatcttcatggatataagtattaagctgcttgctaaatgccttttac 248

                                                         
Query: 302 cataaatcacaaaaggaaattctcttattttatttattgaaagtct 347
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cataaatcacaaaaggaaattctcttattttatttattgaaagtct 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)