BAC Information

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BAC

Clone NameMSMg01-210J09
Chromosome2 (Build37)
Map Location 68,280,914 - 68,281,159
singlet/doubletsinglet
Overlap geneStk39
Upstream geneCmya3, LOC621171, LOC227995, B3galt1
Downstream geneLOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9, Lrp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210J09.T7 (MSMg01no210_j09.b1)MSMg01-210J09.TJ (MSMg01no210_j09.g1)
ACCAG392647AG392648
length881728
length of high quality
(start - end)
98 (102 - 199)248 (77 - 324)
definitionCHROMAT_FILE: MSMg01no210_j09.b1 PHD_FILE: MSMg01no210_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:11 2005CHROMAT_FILE: MSMg01no210_j09.g1 PHD_FILE: MSMg01no210_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTTCTTCTCCTCTTCAGGGACGGGGCTGGTTCTATACCCCCNAANNNN
NNNNCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGGCTTCCTCTGCCACCCTAGGTGTGTGCCACCACCAGG
AGGCAACTTTTATCAATCTTAAGAGTGCCGTGTGGTGTTGGGGTTGGATA
ACNNNCNNTTNTCNNTTNGTGGGTCTGGCCGCGTGTGGTCTTCGCGTCGG
CGCTGTGTGTCGGGTGGAGTCTGGAGCGTCTTACTCATTTTTTTTCTTTT
CTTTTATTACCTCCTCTTGCACTATATTTTGCTCGGGTCGGTCGGTGGTG
CTGGGTGTGGCCCGGGGTTTTTTCTTTTTTCTTTCGATACCCGCGCCCAC
AACAGGAGCGTTTTGGAGTGAGTTCGGAAGGACGGGTGCCCGGTTGGTGC
TTTTTGGGAATGTAAGGGTGTGGGTTTGGGCCCCCCCCCCACTAAAAAAA
AAAAATGATGTGTCGCGGGGGGGGTGGTGGGGGTGGGGGGCGGGCTGGNG
GTCGTGGGTTTCGTTTTTTGTTCCTTGACGTTTCGTGGGATTGTGTACTC
GCTGTTTAGGGCAGTGGGTTAGTCACTTTTTTTCCTCTTCATATGGCTGT
TCTGCTTTTTTTTGGCCTGCCGTGGGGGGGTGCGGTAGGGGGGTGTCGGC
GGGCCTTGGGTGCTGGGGGGGGGGGGCGGGGTGCGGGGTGGCGGGCGCGG
GGGGCGGGTTGGGCTGTGTCTGGGGGCGAAGGGCTTGCTGGGCGTTCGGC
TTATATCCACTTTCCTATTTTCCATCGTCGATTTGTGGTGATTACATGCG
CCCACTCGGTCCGTGGTGTTTGTTTTATGCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGGCAATACTGAGACAGCCAAG
CAAACACTGCTTTTGGTGAGCAGCCACATGTGTGTTTCTGTCAAAATAAA
TTAAGTTAGAAATTCAGAAAATATTTTGTGACTTCTGTTCTAAGTATTTA
ACAAGTAGAATAAACATCCGGACACAAACAACATCAAGTCTAAGGAAAAC
AAAAATAAAAAGCCAAGCCAGCCCTGAGACGGCTGACAGATCCTCTTGCT
GTTGGTCCAGGTTGTGCCACCTTTGTTTGGCTGACTCCTTGCTACAGTCC
TCTCAGGTATTTTTTTCNCTCATNTCCCTTNCTGCCCAGNAGATTATTTC
CAGGAAGAAGGAAGCCCCCCCACAAAATATAAAATCAGAGCCCTGTTCCC
TCTGTTCCTCCCCCATACAAAGTTTTCCCCCACTTTTCTGATTTCATCCA
CAGTGAATGATCCTCTTTGTCAAGCTTATTATAACTCCATGTGGTTTGTA
ATGCTACTGTACTCATCAAATGTATCTGCTCTACAATAACTGCCCAGATA
TTTACTCTTTATCCACTCCTCATCTTCCTCACTTTTTTTCCTTTTTTCAC
CCCTCTTGACTTTTTCTTTATCTTTTTTCTCCTCCCTCTCTTCCATTTAT
TTCCTTATCTCCCTCCATCTTTTTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_j09.g1 MSMg01no210_j09.g1 CHROMAT_FILE:
MSMg01no210_j09.g1 PHD_FILE: MSMg01no210_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:11 2005
         (248 letters)



>mm_chr2_68280714_68281361
          Length = 648

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaggcaatactgagacagccaagcaaacactgcttttggtgagcagccacatgtgtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 446 caaggcaatactgagacagccaagcaaacactgcttttggtgagcaggcacatgtgtgtt 387

                                                                       
Query: 61  tctgtcaaaataaattaagttagaaattcagaaaatattttgtgacttctgttctaagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tctgtcaaaataaattaagttagaaattcagaaaatattttgtgacttctgttctaagta 327

                                                                       
Query: 121 tttaacaagtagaataaacatccggacacaaacaacatcaagtctaaggaaaacaaaaat 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tttaacaagtagaataaacttccggacacaaacaacatcaagtctaaggaaaacaaaaat 267

                                                                       
Query: 181 aaaaagccaagccagccctgagacggctgacagatcctcttgctgttggtccaggttgtg 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 266 aaaaagccaagccagccctgagacagctgacagatcctcttgctgttggtccaggttgtg 207

                 
Query: 241 ccacct 246
           ||||||
Sbjct: 206 ccacct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)