BAC Information

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BAC

Clone NameMSMg01-210L08
Chromosome2 (Build37)
Map Location 110,495,975 - 110,496,262
singlet/doubletsinglet
Overlap genenone
Upstream geneBdnf, LOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12
Downstream geneMuc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210L08.T7 (MSMg01no210_l08.b1)MSMg01-210L08.TJ (MSMg01no210_l08.g1)
ACCAG392718AG392719
length731736
length of high quality
(start - end)
374 (46 - 419)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no210_l08.b1 PHD_FILE: MSMg01no210_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:21 2005CHROMAT_FILE: MSMg01no210_l08.g1 PHD_FILE: MSMg01no210_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAATTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGGAGTCAACCCTCTTCAGTTCTTTATATATATTGGATATTAGTCCCC
TATCTGATTTATTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATT
TGTCGATTCTCACTTTAAACAGATACCACATACCAAAATTAAATTAAGAA
TAGGTAAACTATCTAAACAGTCCTATACCCCCTAAGGAAATAGAAGGCAT
TAAAAACCTCCCAACCAAAAGAAGCCCGGGACGAGATGGTTTTAGTACAG
AATTCTACCAGACTTCCTCTTTCCCCCCCCCCCGATATCAAACACTCCTC
AAACTATTCCACGAAATACCACCAGAAGGAGTACTACCTAATTCATTCCA
TAAAGCCACAGTTATGCTGATACCTAAACCACACAAAGACCCAACAAAGG
AACAGAACTTCAAACCAACTTTGCTTATGAAGATTGATTTAAAAATACTT
AATAACATTCTAGGAAACCAAATTCTAGAACATACCAAAATGATCATTCA
CTATGATCAAGTAGGTTTCATTCCTGGGATTCAGGGGTGTTTCAATATAC
CGAAGTCCATCAATGTAATCCCCTATATGAAATGAAAACTCAAAGAGTAA
ATACGCTTACCCTCCTCTCCTGATAAAGCTG
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAACACAAATCCTTGTTCCTGGGGCTC
TTCTATTACAGAAGATATAATGGCTGATTTCATCAATTATCAAATAGGAT
TTTCAGCTCCTCTGTTTGGGAGCGTTTGTGCTCCATTTTCTTCATTAATG
TATCCACATACCTGAGCATATTTTGTTTACTTAACATTTACATCTTTTCC
AAATTAGGGATGCAAGACAGACACGTGTCTTACAGTAGGATATACAATAA
TCGCCTTTTCCTTGAGAATTCTTTTTCTAGGGTTTTCTATACAGCAATAG
GGTTTAAATATTATTGATTCTCCCCCCCCCCCCAAAGATATTTTAATAAA
TGTTGTAGTATATTAATCCACAAATAAAAAAAAAGATATTTTTGAGATGG
ACAGGAGAAAACAGAACCAAAAAAAAATTTATCTGATGTATTTGTTTCTT
AAACAGTGCAGGACAATCAAACTTTGTTTCCTCATCACTGATAGCTAAAC
ACTGACCGTCCCTCACAGNATGTTAGTTTTATTAAATCACACTACTTAAG
TTGATAGAAATGTTTTAAACCTGCTTTTCACATGAATAAAAACTCCTTTT
CCGAAGATATAAATTACATACTATTTTTCAGTAATCCCGCATGACTATTT
ATGCCTATCCCATCTTTTTCCCCACCTTTGTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_l08.g1 MSMg01no210_l08.g1 CHROMAT_FILE:
MSMg01no210_l08.g1 PHD_FILE: MSMg01no210_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:21 2005
         (289 letters)



>mm_chr2_110495775_110496464
          Length = 690

 Score =  505 bits (261), Expect = e-147
 Identities = 281/291 (96%), Gaps = 7/291 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacacaaatccttgttcctggggctcttctattacagaagatataatggctgatttcat 60
           |||||||||||||||||||||||||||||||| |||   |||||||||||||||||||||
Sbjct: 488 caacacaaatccttgttcctggggctcttctactac---agatataatggctgatttcat 432

                                                                       
Query: 61  caattatcaaataggattttcagctcctctgtttgggagcgtttgtgctccattttcttc 120
           ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 431 caattatcaaataagattttcagctcctctgtttggaagcgtttgtgctccattttcttc 372

                                                                       
Query: 121 ----attaatgtatccacatacctgagcatattttgtttacttaacatttacatcttttc 176
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 attaattaatgtatccacatacctgagcatattttgtttacttaacatttacatcttttc 312

                                                                       
Query: 177 caaattagggatgcaagacagacacgtgtcttacagtaggatatacaataatcgcctttt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 caaattagggatgcaagacagacacgtgtcttacagtaggatatacaataatcgcctttt 252

                                                              
Query: 237 ccttgagaattctttttctagggttttctatacagcaatagggtttaaata 287
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ccttgagaattctttttctagggttttctatacagcaatagggtttaaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space:   190680
Effective search space used:   190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)