Query= MSMg01no210_m22.b1 MSMg01no210_m22.b1 CHROMAT_FILE:
MSMg01no210_m22.b1 PHD_FILE: MSMg01no210_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:29 2005
(656 letters)
>mm_chr2_159316301_159317355
Length = 1055
Score = 1218 bits (630), Expect = 0.0
Identities = 648/654 (99%), Gaps = 1/654 (0%)
Strand = Plus / Plus
Query: 3 cggaattctctatcatctgcaagtctacattttatcccagaaatttggaaggtttaaagg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cggaattctctatcatctgcaagtctacattttatcccagaaatttggaaggtttaaagg 262
Query: 63 agatactttaagatgatacccacttcaatgatatcatcaacagcatcctctgcatcatca 122
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agatactttaagatgataagcacttcaatgatatcatcaacagcatcctctgcatcatca 322
Query: 123 tcagtaccagctatttgaatgtagttccttttactgtgaacctggccgcatgcaagaata 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcagtaccagctatttgaatgtagttccttttactgtgaacctggccgcatgcaagaata 382
Query: 183 ataataggaacaaaaaataattcatggtttctcaaaatcatgggtaacattgcccaggcc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ataataggaacaaaaaataattcatggtttctcaaaatcatgggtaacattgcccaggcc 442
Query: 243 aaaaaagcagtttatgaaaatggccctaacttcagggttctcctgcgtcttctattcttc 302
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 443 aaaaaagcagtttatgaaaatggccctaacttcagagttctcctgcgtcttctattcttc 502
Query: 303 tgctatgttaatgagatgtaataaccttttacagaaaaccttttaacatattttctgttt 362
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 503 tgctatgttaatgagatgtaataaccttttaaagaaaaccttttaacatattttctgttt 562
Query: 363 atctcaaatatttccttcctttgtcctcaaggttgggcagtaattggaaaaaaaaaattc 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 563 atctcaaatatttccttcctttgtcctcaaggttgggcagtaattggaaaaaaaaa-ttc 621
Query: 423 tattttcctttccttcgccgatcccactcaagttgagcaggccctggctccttgcccacc 482
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tattttcctttccttcgccaatcccactcaagttgagcaggccctggctccttgcccacc 681
Query: 483 cacctttattccagatgttaccctggcgaacctctcaggctgtaaccaggcaaccattgg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cacctttattccagatgttaccctggcgaacctctcaggctgtaaccaggcaaccattgg 741
Query: 543 gaagagggccctcctggctctgggcctagaaacaaaagaaaaacaaataggaggatgtct 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gaagagggccctcctggctctgggcctagaaacaaaagaaaaacaaataggaggatgtct 801
Query: 603 tgagtcttctacctactttggttttccaatctcacttccctcggacttttatta 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tgagtcttctacctactttggttttccaatctcacttccctcggacttttatta 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1055
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1045
Effective search space: 675070
Effective search space used: 675070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no210_m22.g1 MSMg01no210_m22.g1 CHROMAT_FILE:
MSMg01no210_m22.g1 PHD_FILE: MSMg01no210_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:29 2005
(648 letters)
>mm_chr2_159440205_159441252
Length = 1048
Score = 1120 bits (579), Expect = 0.0
Identities = 615/627 (98%)
Strand = Plus / Minus
Query: 22 tgtaagtgacccttcaccataacttgtgaatatagttctattattgtcatcatggtcttg 81
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 1048 tgtaagtgacccttcaccataacttgtgaatacagttctattactgtcatcatggtcttg 989
Query: 82 actgagggacagatgacaagagacctattgaaaaatcaacaagaagagaggaaaggcaca 141
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 988 actgagggacagatgacaagagacctattgaaaaataaacaagaagagaggaaaggcaca 929
Query: 142 agaaaatgatgggatccactcaccagtaggcagcacccctccatagcttccacatcggct 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 agaaaatgatgggatccactcaccagtaggcagcacccctccatagcttccacatcggct 869
Query: 202 cctggctccaggttcctgccctgtttgagttcctgtcctgacttccttcaatgataaaca 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 cctggctccaggttcctgccctgtttgagttcctgtcctgacttccttcaatgataaaca 809
Query: 262 gagttgtggccatgtaagccaaataaatactttcctccccaagatgctttgatcatggaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 gagttgtggccatgtaagccaaataaatactttcctccccaagatgctttgatcatggaa 749
Query: 322 gatcaaaggagatggaagtgaatttgcaaaagtccacttttgacaggaagtctgacctca 381
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 748 gatcaaaggagatggaagtgaatttggaaaagtccacttttgacaggaagtctgacctca 689
Query: 382 aacacattgcagtaagattgtgtcatacaaggtcaaggaaggtaaagattatgcaaaatc 441
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 688 aacacattgcagtaaaattgtgtcatacaaggtcaaggaaggtaaagattacgcaaaacc 629
Query: 442 tagctaactgactgacatttataaatgcagctttattggaagtagctaattaccttcata 501
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tagccaactgactgacatttataaatgcagctttattggaagtagctaattaccttcata 569
Query: 502 ttggcattgccaatagcttgtgaggcattatggtaaaccagaacagttgtataaataaat 561
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 568 ctggcattgccaatagcttgtgaggcattatggtaaaccagaacagttgtgtaaataaat 509
Query: 562 aaattaataataaagtaagtcaactaaagcaaatgtgttttttcattaactattaaccct 621
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 508 taattaataataaagtaagtcaacaaaagcaaatgtgttttttcattaactattaaccct 449
Query: 622 tgacagaaaatcaacataatattcatc 648
|||||||||||||||||||||||||||
Sbjct: 448 tgacagaaaatcaacataatattcatc 422
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
