BAC Information

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BAC

Clone NameMSMg01-211I24
Chromosome2 (Build37)
Map Location 55,431,391 - 55,431,747
singlet/doubletsinglet
Overlap geneKcnj3
Upstream geneGalnt13, LOC666936
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211I24.T7 (MSMg01no211_i24.b1)MSMg01-211I24.TJ (MSMg01no211_i24.g1)
ACCAG393233AG393234
length1,2071,236
length of high quality
(start - end)
416 (29 - 444)358 (73 - 430)
definitionCHROMAT_FILE: MSMg01no211_i24.b1 PHD_FILE: MSMg01no211_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:50 2005CHROMAT_FILE: MSMg01no211_i24.g1 PHD_FILE: MSMg01no211_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCTCACTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CCAGAGCAGCCAAAAGAATCAGAGACATACCAGTGTTATAAATCCCACAA
AACCATGAAGCTAATAGCCATAATGTACTCGTAGAACCTTGCAGGTCCCA
TGTCTGCTGCCTCAGTCCTTGTTAATCCATATGAGCAATTCTTAGTTGAT
TTGGTGAGTCATGCTCTCTTGGTGTCTCCCATTCTGTGACTCCTACAATC
TTTTCTTCCCTTCTTCCTTGGTGTTCTCTGATTTCCGAGGGGAGAGAACT
AATAAAGACCACCAATTTAGATCCCCTTTCTAGATATTTTTTGGCTCTGC
TTCTCTGTACTGGTGGCCAGAAGAAGCGTCTCTGATAAAGACTGGATTTA
GCACTGATCTATGAGTACTGTAAAATATCATTAAGAATTACTTCTTTTTT
TTGTCCCCCCCCCCGAACAGNAGTGCTTTTTTCTTCAAAAATTGTCTCTG
AACTATTCAGTCTCCAGTTTCCGGTTAATGGGTGAATTTTTTATTCACTG
TTGGAGGTTGTTGTGTAGCTTATTCTGCACACTGCTTGCAAACTATCCCA
TTAAAGCTCTATCAGATTTATTAAATTACTGTCATTGAAGAATTTAAATC
CAGGAGAGTATGCTAAACCTGTCTGAGCTGTTTGAACTAACTCTGCATGT
TGTAGCTATGTGATTGGCACATATTCTCAAACTTCACATCATGATGACCA
CATATCCAGTATGTTAGTCAATGTGGACTTGTGCAGGAGGTGGTAAATCA
TAGGGAAAGATTGCATGGCTGTGAAGAGCAAAGAAAAGGGTAATTGGAAA
ACATTCTGGGATGTCCATGGCCAAATCTCTTTGACCATGTCTCATCTTGT
ATTAAATAAAGGGTAGAGGGCTTCATGTAGCACCCATAACCTACCCAGCA
GAGACTAAAATCCTGTATCACTAATCCATAGGAACCATTCCACTTTTACA
TAGCCAAAAGTACTGGATCCAGCCAAATGGATCCCCACCCCTACCTGTTT
AATCCCCCAAATGTTTCAGGCAAACTTGGCAAGGTGCCCCAAATAAATAA
ATCCTTTGAATCTCTTTGAAAAAAGCCCCCCAATAAAATCTCTTTGACCG
GGGTTGATTTTATAAATCAGGTCTGAAAATGTTCCTTTTATCACCCACGC
AACTAAA
NNTTCTAGATGCGAGNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTGAGAGAATGGGAAAATTAAATCAAA
GAATCAAAATTTCATTTCAGTATTCCAAAAAATTGTACGTTTGTGTATAA
TTGCTAATTGGATTTTTGTAATTAGGTAACTGGGTTATTTTTACCTAATT
ACATTTTCATGTATTTTACAATTTCTATGTTATAAAAATTAACAATATGA
TTTTAATATGATATTAAATAAAACTAGCAGGTAATAAAATATATAAACAC
ATTAAATTCCATTAACTATTAATCCCACCTCTTCTAGGGGAACATGAAAA
GCAGCATCATTTTACCTGAAACAACATAACAAGTGACACTAAGTGAATTT
TTCAAGGCAAGAGTGAAAAGTTTCTGTATAAGACCATGGGGCACCTTATT
TTTTTTCCCACCCCCCAAGGAATCTCCGATCCCTTTAAAAAAAGAAGGGG
TCNGAATACCCCTCCATTGCTTATGGAAAATCAAACTGGTATAACCACTT
TGGTAATCAATTTGGTGGTTTCTCAAAAAACTGAAAATAGTTTTACCCCC
AAACCCAGCTATACTACTCCTGGAAATATACCCAAAAAATGCCCCAATTA
TATCACAAGATCCTCAACTATGCTCAAAGCAGCTATTTTCGTAATAGCCA
GAAACAGGAAACAACCTAGATGTCCCTCACCTAAAGAACTGATTAACAAA
AACAGGCCCATCTATACAATGGAATACTACTCATCATTTAAAACAAGAGG
CATGAAATTTTGCAGGCAATTGGATTGAATTATAAAATTATTTATCCTGA
ATGAAGTACCTCAAAAGGAAAAAGATACCCTGCCCATGTACTCACATATA
ATTCGGCATTAGCCTTGAAAAACGGGATATTCCTATTACAAGCTACAGAA
CCAAAGAAAATTATGAAATAAGGAAAACCCCAGGTAATTCCCCTTCAAAA
GGGAAAACAATAAGATTCTTTTGAAGCCATACCGAAAACACATAATTTAA
ATGGCCAAAAGTAATTGAAAAAGGGCAACAAGGTTATGAAAAATTAAGTT
AGGAAATAAGGGGTAATGCTCATATTTCTCTCTTTATCNTCTCTTCACTC
TTTAACCACTTTCCTCCCCCTCTCTTTCGTATTCATTCCTTACACTTTTT
TACTATTTTCCTCTTCTACTTCACTTCCTACTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_i24.g1 MSMg01no211_i24.g1 CHROMAT_FILE:
MSMg01no211_i24.g1 PHD_FILE: MSMg01no211_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:50 2005
         (358 letters)



>mm_chr2_55430990_55431747
          Length = 758

 Score =  652 bits (337), Expect = 0.0
 Identities = 352/357 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   ttgagagaatgggaaaattaaatcaaagaatcaaaatttcatttcagtattccaaaaaat 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ttgagagaatgggaaaattaaatcaaagaatcaaaatttcatttcagtattccaaaaaat 699

                                                                       
Query: 62  tgtacgtttgtgtataattgctaattggatttttgtaattaggtaactgggttattttta 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tgtacgtttgtgtataattgctaattggatttttgtaattaggtaactgggttattttta 639

                                                                       
Query: 122 cctaattacattttcatgtattttacaatttctatgttataaaaattaacaatatgattt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 638 cctaattacattttcatgtattttacaatttctatgttataaaaattaacaatattattt 579

                                                                       
Query: 182 taatatgatattaaataaaactagcaggtaataaaatatataaacacattaaattccatt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 taatatgatattaaataaaactagcaggtaataaaatatataaacacattaaattccatt 519

                                                                       
Query: 242 aactattaatcccacctcttctaggggaacatgaaaagcagcatcattttacctgaaaca 301
           |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 518 aactattaatcccacctcttctagtggaacatgaaaagcagcatcgttttacctgaaaca 459

                                                                    
Query: 302 acataacaagtgacactaagtgaatttttcaaggcaagagtgaaaagtttctgtata 358
           ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 458 acataacaagtgacactaagtgaagctttcaaggcaagagtgaaaagtttctgtata 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)