BAC Information

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BAC

Clone NameMSMg01-212H21
Chromosome2 (Build37)
Map Location 84,539,995 - 84,540,359
singlet/doubletsinglet
Overlap geneZdhhc5
Upstream geneItgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19
Downstream geneClp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212H21.T7 (MSMg01no212_h21.b1)MSMg01-212H21.TJ (MSMg01no212_h21.g1)
ACCAG393827AG393828
length737740
length of high quality
(start - end)		372 (46 - 417)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no212_h21.b1 PHD_FILE: MSMg01no212_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:16 2005CHROMAT_FILE: MSMg01no212_h21.g1 PHD_FILE: MSMg01no212_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCATTATCCTCTTGAGTGCTCTAATTACAAGTGTGAACCACTAT
ATCCGGCTGAAAAATTTATCTTAATAATAGTTTAAGTAGTGTATTTATGT
ATTTATAAGGAGAAGATAGAGCTGAATTACAGTTGTTTGCAGGCAGTGAA
TGGAAAATGAGCAAGCAGTCATCAGGTATTAGATTTCCTCTTTTAAGAAG
TAAGCAAAGGGTCGGGCATGGTGGCGCACACCTTTAATCCCAGCACTCGG
GAGGCAGAGGCAGGCGGATCTCTGAGTTCGAGGCCAGCCTGGTCTACAGA
GTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCTGTCTCGAAAAA
CCTAAAATCCTAACACCCACCCCAATAAAAAGTAAGCAAAGAAGGTAGAA
GCTGGTAGAATATTTTAATGGAGAAGCAGACTTTTTACAAGACGGAAGCA
TGAGATTGAGCCAGAGAAGACTATGAAGCCTGGCTGGAAGACCAGGAAAA
GCTGAAAGTTCTTCTAGAGCATAGTGGAAGTCCTGCTCATGTAGGGAGCA
GGCTCTTTGGAAAGGGAATGATAGTAATAACCGTCTTGAGGAACAAGTGT
ATAGAGGCCATGAGCTAACAAAAAGCTATTACTAATGACATCTACTTTGC
TCACAAGTGTAAGATGATTTTCTTATGTGTTTTCCTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATTTCCAGTACACACGCTGTGGC
TCAAAGTCATTCAGAACTCCAGTTCCAGGAGATCTGAAGCTGCTACACAC
ACACACACACAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT
AAATAAATAAATAAATAAATTTTAAATGAGATGGCTCAGTGGGTAAGGTG
CTTGTCATTAGACCTGGAGTTTCATTTTGATTCTCAGGCTCCCCATGGTG
GAAGGAGAGAACTGAACCTCACATGTTGTCCTTTGGTTTCGACACATTCA
CCCTGGCATGTGTTTTTTCACACCCACACCACAACTAATTAAAAACTAAT
TTAAAAAAACAAAGAAAAACGCATTGTTAAAATGGGTAAGCTAGAGAGAT
GGCTCAGCAGTTAAGAGCACTGACTGCTCTTTCAGAGGTCCTGAGTTCAA
TTCCCAGCAACCACATGGTGGCTCACAGACATCTGTAATGGGATCTGATG
CCCTCTTCTGGTGAGTGTGAAGACAGCTACAGTGTACTAATATAAATAAA
TAAATAAATATATCTTTTTTAAAAGTGGGCATTGTAGTGCACATGCCTGT
AATCCCAGCATTTGGAAAGTGGAGGAGGCAGAAGGATCAGGAGTTCAGGA
TCAGCCTTGGCTATACAGTACACTTGAGGTCAGACTGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_h21.b1 MSMg01no212_h21.b1 CHROMAT_FILE:
MSMg01no212_h21.b1 PHD_FILE: MSMg01no212_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:16 2005
         (372 letters)



>mm_chr2_84539886_84540657
          Length = 772

 Score =  659 bits (341), Expect = 0.0
 Identities = 359/365 (98%), Gaps = 1/365 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgcattatcctcttgagtgctctaattacaagtgtgaaccactatatccggctg 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gaattctgcattagcctcttgagtgctctaattacaagtgtgaaccactatatccggctg 415

                                                                       
Query: 65  aaaaatttatcttaataatagtttaagtagtgtatttatgtatttataaggagaagatag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aaaaatttatcttaataatagtttaagtagtgtatttatgtatttataaggagaagatag 355

                                                                       
Query: 125 agctgaattacagttgtttgcaggcagtgaatggaaaatgagcaagcagtcatcaggtat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 agctgaattacagttgtttgcaggcagtgaatggaaaatgagcaagcagtcatcaggtat 295

                                                                       
Query: 185 tagatttcctcttttaagaagtaagcaaagggtcgggca-tggtggcgcacacctttaat 243
           ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 294 tagatttcctcttttaagaagtaagcaaagggtcgggcagtggtggcgcacgcctttaat 235

                                                                       
Query: 244 cccagcactcgggaggcagaggcaggcggatctctgagttcgaggccagcctggtctaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 234 cccagcactcgggaggcagaggcaggcggatctctgagttcgaggccagtctggtctaca 175

                                                                       
Query: 304 gagtgagttccaggacagccagagctacacagagaaaccctgtctcgaaaaacctaaaat 363
           |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 174 gagtgagttccaggacagccagggctatacagagaaaccctgtctcgaaaaacctaaaat 115

                
Query: 364 cctaa 368
           |||||
Sbjct: 114 cctaa 110


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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