BAC Information

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BAC

Clone NameMSMg01-212M02
Chromosome2 (Build37)
Map Location 4,506,958 - 4,507,240
singlet/doubletsinglet
Overlap geneFrmd4a
Upstream geneLOC666495, 3110001A13Rik, LOC100040257, LOC100040163, LOC666944, 1700080N15Rik, EG634452
Downstream genePrpf18, LOC623483, E130319B15Rik, LOC666973, Sephs1, Phyh, LOC381346, LOC100040250, LOC100040426, 1110017I16Rik, Mcm10, Optn, Ccdc3, LOC100040292, Camk1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212M02.T7 (MSMg01no212_m02.b1)MSMg01-212M02.TJ (MSMg01no212_m02.g1)
ACCAG393997AG393998
length704708
length of high quality
(start - end)
312 (42 - 353)284 (73 - 356)
definitionCHROMAT_FILE: MSMg01no212_m02.b1 PHD_FILE: MSMg01no212_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:37 2005CHROMAT_FILE: MSMg01no212_m02.g1 PHD_FILE: MSMg01no212_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTG
AAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATC
CGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGG
TCCCATTTGTCAATTCTCGATCTTACAGCACAAGTCATTGCTATTCTATT
CAGGAATTTTCCCCCTGTGCCCATATCTTCGAGGCTTTTCCCCACTTTCT
CCTTTATATTTTTCACCGCCCCTGGTTTTATGTGGAGTTCGCAACCTACT
TTTAATAAGGGCTCAACCTCTCCTCCAGCCCAGCACCCAGCAGAGGTAGT
GGAAGACAAGAGTTATTAGGATTTGGGGGAAGCGGACTTGCTCAGCCAGA
GTTCCCTGGGAGTAAGCTTGCTCTCTCTCAGCAGTTCAGTTCTGCAGCAC
ACACCAAACAGGACTTAGCAGCTGCAGACCAGTCTTGGCAGGCATACACC
AGGCAGCTGTCATTCTATCCCGAAGAAACGGACAGACTCCCCAATCCGCT
TGAGGCGAGGCTTGCTAAGTGGAAAGGTGCCCTGAAACCGCACCAGCAGG
TCTG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAATACCATGTGGAAATGGTATAGCTTC
ATGAAGGACGGTCAGGGGAGTGGACTCTCCTGAACAAGAACACTGTCATT
TCTGATTGTCTTAAGACATGTCACACCAGCCAATTTTTATATGCTTTACA
AAAGGGAGGGGGAGAATAAAGTTTAAGTTAATATTAATAATTTCAATCAT
GACTTAAATTTTCTCTTGTCTACTGAAAGATGCTGGTTTTTGCTTATTGC
ATATATAATATCTGTTCTTTGCAAAATATATGAAAATATAGACAGGTATA
ATAATATTTATTATATCCCCCCCCCCCTAATAGTACACATGAACACACAT
ACCAACTAGAATTTTGTTCTATATTATCTGAGTGCTATATGCTGAGAAAA
CGTTTCTCCTAATGGAAAGAATACAATATAGAGTGATGCATAGTTTTCAA
GAGACGTAAATGTACTTTCCTTGCTTTCCTGGCTAGCACGTCTGCATGAT
TCAAACAGCAGGCTTCTAGATAGGAGGCAACTGTTGAAGATACCAACTGG
AGGAATTTAGCTTAAACCAAAAGATTAATTTCTAGGTTGCAGTGTCTGGC
TCCTGNAGCAGGTTTCTTATACTGAGCTTGGCAGCTCTTTCTACATTGAT
GGGTGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_m02.g1 MSMg01no212_m02.g1 CHROMAT_FILE:
MSMg01no212_m02.g1 PHD_FILE: MSMg01no212_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:37 2005
         (284 letters)



>mm_chr2_4506758_4507440
          Length = 683

 Score =  518 bits (268), Expect = e-151
 Identities = 280/284 (98%), Gaps = 1/284 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaataccatgtggaaatggtatagcttcatgaaggacggtcaggggagtggactctcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 aaataccatgtggaaatggtatagcttcatgaaggacggtcaggggagtggactctcctg 424

                                                                       
Query: 61  aacaagaacactgtcatttctgattgtcttaagacatgtcacaccagccaatttttatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aacaagaacactgtcatttctgattgtcttaagacatgtcacaccagccaatttttatat 364

                                                                       
Query: 121 gctttacaaaagggagggggagaataaagtttaagttaatattaataatttcaatcatga 180
           ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 363 gctttac-aaagggagggggagaataaagtttaagttaatattagtaatttcaatcatga 305

                                                                       
Query: 181 cttaaattttctcttgtctactgaaagatgctggtttttgcttattgcatatataatatc 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 304 cttaaattttctcttgtctactgaaatatgctggtttttgcttattgcatatataatatc 245

                                                       
Query: 241 tgttctttgcaaaatatatgaaaatatagacaggtataataata 284
           ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 244 tgttctttgaaaaatatatgaaaatatagacaggtataataata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 683
Length adjustment: 9
Effective length of query: 275
Effective length of database: 674
Effective search space:   185350
Effective search space used:   185350
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)