BAC Information

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BAC

Clone NameMSMg01-213C21
Chromosome2 (Build37)
Map Location 154,042,674 - 154,043,171
singlet/doubletsinglet
Overlap geneU46068
Upstream geneTspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik
Downstream geneBC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213C21.T7 (MSMg01no213_c21.b1)MSMg01-213C21.TJ (MSMg01no213_c21.g1)
ACCAG394266AG394267
length716722
length of high quality
(start - end)
502 (38 - 539)288 (69 - 356)
definitionCHROMAT_FILE: MSMg01no213_c21.b1 PHD_FILE: MSMg01no213_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:09 2005CHROMAT_FILE: MSMg01no213_c21.g1 PHD_FILE: MSMg01no213_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
GGCACTTCCAGCTGAAAAAAGTCTCTGAGTGTAGAGAGCTCTCAATGAGC
CACACCCCAGAGCAGCGGGGGTTCTCCCAGTCTATCTGGTCAGACCCTGG
CAGCTTCTGCCTGCGGGAGACCTGGTATTCCAACATGTCTGCTGGATGCT
CTTGTCATGGGGGGACAAGTCAGGGAACCTGAGATGGCCCTGACGACCTG
GCAGTGATTCCCTCTTCCTCACAGCCTGAAGTCCTGAAGGACACCCTGAC
CAAGATCCTTGAATACACACTGCTGCCCAATGAGAATGGTGAGTCCCTGG
GCCCTCATGGCCCTCCCTACGCTGCTGCACCTCCTGTCTTCACCCGGGAC
TCCTGTTTTCATGACCTACCTAAGCCTAGTTCTAACTCTTCCTGCTCCAG
GGAGCATTCCTAGTCACCAACTGGAGAAGACCTCTCCTGCCTGGCATCCC
CTCAACAGCCTGATCCTTTACTATGCCAGTTCTAAAGCAGGCAGGGATGA
GCTGGCAGACACCAGGTTCACAGGGCCAGCTGGAACCAGATGCTGACAGC
TAGACCTCACTCAAGAGGCTTTAGGCAGACTGAGTTCAAGTCCCCAACCC
TCTTGCTGGCTTTGAACAAGCTCCCTGATCCTCCTGAGCCTTGTGCTTTC
CACCTCGTAAAGATAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATGATGTCTCTAAGACTCTTAACATGGAGGGG
TATTGAATTTTGTTGAAGGCTTTTTCAGGATCTAATGGGATGATCATGTG
ATTTTTTCCTTTCAGTTTGTTTATATAGTGGATTACATTGAAGGATTTTC
TTTTTTTTTTTTTTAGTCTTTCGATCGAGACAGGGTTTCTCTGTGTAGCC
CTGGCTGTCCTGAAACTTACTCTGTAGACCAGGCTGGCCTTGAACTCAAA
AATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCAC
CACCGCCTATTCTCATTGCCCCTTCCTGAAGGCTCTGGGAAAACAAGCTC
ATACTTATTTGAGAACGACAGATGATGGGAGGATTTTATATTCTCTGAGT
TCACTTTATTCCCAGAACTGGTTTTGTAGGTGTCTTTTTCTGACTTGATG
AAGGCAAAGACTTCTGGAGATTCCAGTCATCTGAATCATCCTTGTCTTCA
TCATGATCTCATCCAGTTTTTCCTCTAACCTCCCTGGGTGAAGACATATT
GTCCCCATAGCTGGAATAAGATGGGCAAAGAGCTTCTGCAGACACTGAGC
CTTAGTTCCTGGAGTCAGGCAGGTCTAGTTAGTGTCCAGGGGTCCAGAGA
CAATTTGGAACGCTCCATTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_c21.b1 MSMg01no213_c21.b1 CHROMAT_FILE:
MSMg01no213_c21.b1 PHD_FILE: MSMg01no213_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:09 2005
         (502 letters)



>mm_chr2_154042470_154043371
          Length = 902

 Score =  903 bits (467), Expect = 0.0
 Identities = 491/499 (98%), Gaps = 2/499 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaggcacttccagctgaaa-aaagtctctgagtgtagagagctctcaatgagc 63
           |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 205 gaattctcaggcacttccagctgaaacaaagtctctgagtgtagagaactctcaatgagc 264

                                                                       
Query: 64  cacaccccagagcagcgggggttctcccagtctatctggtcagaccctggcagcttctgc 123
           || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaaccccagagcagtgggggttctcccagtctatctggtcagaccctggcagcttctgc 324

                                                                       
Query: 124 ctgcgggagacctggtattccaacatgtctgctggatgctcttgtcatggggggacaagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgcgggagacctggtattccaacatgtctgctggatgctcttgtcatggggggacaagt 384

                                                                       
Query: 184 cagggaacctgagatggccctgacgacctggcagtgattccctcttcctcacagcctgaa 243
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 385 cagggaacctgagatggccctgacgacctggcaa-gattccctcttcctcacagcctgaa 443

                                                                       
Query: 244 gtcctgaaggacaccctgaccaagatccttgaatacacactgctgcccaatgagaatggt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtcctgaaggacaccctgaccaagatccttgaatacacactgctgcccaatgagaatggt 503

                                                                       
Query: 304 gagtccctgggccctcatggccctccctacgctgctgcacctcctgtcttcacccgggac 363
           ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 504 gagtccctgggccctcaaggccctccctaggctgctgcacctcctgtcttcacccgggac 563

                                                                       
Query: 364 tcctgttttcatgacctacctaagcctagttctaactcttcctgctccagggagcattcc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcctgttttcatgacctacctaagcctagttctaactcttcctgctccagggagcattcc 623

                                                                       
Query: 424 tagtcaccaactggagaagacctctcctgcctggcatcccctcaacagcctgatccttta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tagtcaccaactggagaagacctctcctgcctggcatcccctcaacagcctgatccttta 683

                              
Query: 484 ctatgccagttctaaagca 502
           |||||||||||||||||||
Sbjct: 684 ctatgccagttctaaagca 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)