Query= MSMg01no213_n08.b1 MSMg01no213_n08.b1 CHROMAT_FILE:
MSMg01no213_n08.b1 PHD_FILE: MSMg01no213_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:58 2005
(187 letters)
>mm_chr2_169644433_169645022
Length = 590
Score = 306 bits (158), Expect = 7e-88
Identities = 181/190 (95%), Gaps = 3/190 (1%)
Strand = Plus / Plus
Query: 1 ttctaagacatgatcactgtcatccaacatgggtcctccccg---cacccccattaccat 57
|||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||
Sbjct: 201 ttctaagacatgatcactgtcatccaacatgggtcctccccgccccccccccactaccat 260
Query: 58 ttgacaaattaatcatgggtcgaaatacagccctctccccacaggcagccatccccattt 117
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgacaaattaatcatgggtcaaaatacagccctctccccacaggcagccatccccattt 320
Query: 118 atggctcagtcttggctcacaggaccccgtgcttctaaatctctgcctatagaagtccac 177
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 atggctcagtcttggctcagaggaccccgtgcttctaaatctctgcctagggaagtccac 380
Query: 178 acatccaagg 187
||||||||||
Sbjct: 381 acatccaagg 390
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 590
Length adjustment: 8
Effective length of query: 179
Effective length of database: 582
Effective search space: 104178
Effective search space used: 104178
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no213_n08.g1 MSMg01no213_n08.g1 CHROMAT_FILE:
MSMg01no213_n08.g1 PHD_FILE: MSMg01no213_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:58 2005
(258 letters)
>mm_chr2_169816393_169817054
Length = 662
Score = 422 bits (218), Expect = e-122
Identities = 250/264 (94%), Gaps = 8/264 (3%)
Strand = Plus / Minus
Query: 1 tgactagcctgagccaccctgttgtgaagaagccaaatgagcagctgccctttgaggagg 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 462 tgactagcctgagccaccctgttgtgaagaagccaaatgagcagctgggttttgaggagg 403
Query: 61 ---catggtgagacagaggcactgaggtggagtgcacc---cttctcactcgattgagat 114
||| ||||||| ||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 402 ttt--tggggagacaggggcactgaggtggagtgcacccttcttctcacttgattgagat 345
Query: 115 ttcaggagagctgacctctaccagccaccactgagaactggcatggcgcctgctcatctc 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttcaggagagctgacctctaccagccaccactgagaactggcatggcgcctgctcatctc 285
Query: 175 agcagcccggtccaacaccatccttctgattgcatcttacaaggcagaccgctcatcctg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 agcagcccggtccaacaccatccttctgattgcatcttacaaggcagaccgctcatcctg 225
Query: 235 tctgctggcctccggttttagcac 258
||||||||||||||||||||||||
Sbjct: 224 tctgctggcctccggttttagcac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 662
Length adjustment: 9
Effective length of query: 249
Effective length of database: 653
Effective search space: 162597
Effective search space used: 162597
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
