Query= MSMg01no214_c12.b1 MSMg01no214_c12.b1 CHROMAT_FILE:
MSMg01no214_c12.b1 PHD_FILE: MSMg01no214_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:23 2005
(589 letters)
>mm_chr2_83553099_83554087
Length = 989
Score = 920 bits (476), Expect = 0.0
Identities = 543/587 (92%), Gaps = 33/587 (5%)
Strand = Plus / Plus
Query: 1 atctttaaaaaaaattgtcctcaagacatattcctgactctagccaaacctcataaagag 60
||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 atcttgaaaaaaaaatgtcctcaagacatattcctgactctagccaaacctcagaaagag 260
Query: 61 aaatacaccagaacttccaagtttttgaagatgaactacacagaggcagtggttatttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatacaccagaacttccaagtttttgaagatgaactacacagaggcagtggttatttgg 320
Query: 121 cttccactagaaacgttaggaaaaataaattatttcagacccatggaaaagtatgttcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttccactagaaacgttaggaaaaataaattatttcagacccatggaaaagtatgttcca 380
Query: 181 acaagcatgatgttacagatagagatttccaaacctggaaaatatttagaagaaatgttc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 acaagcatgatgttacagatagagatttccaaacctggaaaatatttagaagaaatgtac 440
Query: 241 tgtttctcgcacttgcttggaaagcacaacgggaggtggacgcatgggaggggcttgctg 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtttctcgcagttgcttggaaagcacaacgggaggtggacgcatgggaggggcttgctg 500
Query: 301 gagaagcgcagacacatgggaggggcttgctggggaagagcagacacgtgggaggggctt 360
| ||||||||| |||| ||||||||||||
Sbjct: 501 g--------------------------------ggaagagcatacacatgggaggggctt 528
Query: 361 gctggggaagagcagacacgtgggaggggcttgctggggaggagcagacacgtgggaggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gctggggaagagcagacacgtgggaggggcttgctggggaggagcagacacgtgggaggg 588
Query: 421 gcttgctggggaggagcagacacgtgggaggggcttgctggggaggagcagacacatggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 589 gcttgctggggaggagcagacacgtgggaggggcttgctggggaggagcagacacgtggg 648
Query: 481 aggggcttgctggggaggagcagacacatgggaggggcttgctggggaggagcaagacac 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 649 aggggcttgctggggaggagcagacacatgggaggggcttgctggggaggagca-gacac 707
Query: 541 aagattacactgaanagaanagaatatgagttnggggggcggggggg 587
|||||||||||||| |||| |||||||||||| ||||||||||||||
Sbjct: 708 aagattacactgaaaagaaaagaatatgagttgggggggcggggggg 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no214_c12.g1 MSMg01no214_c12.g1 CHROMAT_FILE:
MSMg01no214_c12.g1 PHD_FILE: MSMg01no214_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:23 2005
(292 letters)
>mm_chr2_83627124_83627815
Length = 692
Score = 540 bits (279), Expect = e-158
Identities = 288/291 (98%)
Strand = Plus / Minus
Query: 1 accttggcatacttattgatttggtaacttgacatatgtcaagcttcatagaacattaga 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 accttggcaaacttattgatttggtaacttgacatatgtcaagcttcatagaacattaga 320
Query: 61 aaattttcagttttacttttcttttgaagaacagagattaataaagtatcagaaatggct 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aaattttcagttttacttttcatttgaagaacagagattaataaagtatcagaaatggct 260
Query: 121 cattcctaaattataatattgcataaaaatcatctaggccttatgttcctatctgtaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cattcctaaattataatattgcataaaaatcatctaggccttatgttcctatctgtaaag 200
Query: 181 ttttgttgtttttgttttgttttgttttaatggggacttaggatgtggaggcaggaggat 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 199 ttttgttgtttttgttttgttttgttttaaaggggacttaggatgtggaggcaggaggat 140
Query: 241 tatgaatccaaggtcattttcagctacaaagcatggttcaaggccaaccta 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 tatgaatccaaggtcattttcagctacaaagcatggttcaaggccaaccta 89
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
