BAC Information

Click to search

BAC

Clone NameMSMg01-214L03
Chromosome2 (Build37)
Map Location 15,979,541 - 16,140,816
singlet/doubletdoublet
Overlap genenone
Upstream geneArl5b, LOC633061, LOC667329, LOC227588, LOC625457
Downstream genePlxdc2, 4930515L03Rik, LOC383665
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214L03.T7 (MSMg01no214_l03.b1)MSMg01-214L03.TJ (MSMg01no214_l03.g1)
ACCAG395236AG395237
length733736
length of high quality
(start - end)		687 (45 - 731)660 (77 - 736)
definitionCHROMAT_FILE: MSMg01no214_l03.b1 PHD_FILE: MSMg01no214_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:06 2005CHROMAT_FILE: MSMg01no214_l03.g1 PHD_FILE: MSMg01no214_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,140,134 - 16,140,816)(15,979,541 - 15,980,199)
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGCTGTGCCTTCAACTCTGACTTGAAATTCCAGTTTGCCACCCA
GCTGCCAGGCTTGACACTACCCCCACATAGATACAACTGGAGAATCTCAA
CTTATTATGTACATATATATTCATACACACACTCAATGTTTCACTTAAGG
CTTGTGAGTCTGTCTCTCCTTTATGTTAAAAGCTCTTTTAAGTCTAAACT
GCTCTATATTAATACCTGTCTACAAATATTGCCCAGTTTATTTTTAAGGC
ACAGAAAACAATTGAAAATTGCTTCATGAATACAAACCTATTAATGGGAC
TGCATTTAAAATGTACTTTTTTTCATATGGCATACCATATTTTAAACCAT
ATTCCCCTTACTTCATGACATGGAGATGAGTATTTGCTAACTAATATGAT
TGGAGTTTATGACTAGAGTTGGAGAACTTAGTGTGTCTCATCAAGCAAGT
CAAAGGAATAATTTAAGGAAAATATCTTGTCTTTCATTGCTCTGAGATAT
ATTGGTGTCACATGTCTAAGTGACCACTAAGTCAGGCCTACAGAACATGA
TATATCTTTTAAAATGTCATACCTTCTTAGGGAAGTCCTTATCTTGATGA
GTTTCTGGAAGTCAGCTCCTTTTACTATTTGGATGACCTGTAGTTTACAC
CAGGGATGGGGAAATGTGCCCTGTGTTGCAAAN

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATTCCTATCTATAAATTTGATTA
CATTTGCATCAGTGAATGCAATTGCTGCTTTTCCTATGGCTCTAAATATT
TGACTTTCAATGTCAAGTTAGAAGGTAGCATAGAAAAAGCTTGAGATTGA
ATTATATTCATTTGCATTTTGCATGTTATAACAGTTAGGAACTAAATGAT
AAAATCTAGATGTATTATCCAACTATATAAACTAGTTATTTCTTCACATC
CAGGTTAAGACCAGTAGATTTCACCTGGTTAACATGCACTGAAATGCCCA
TGTATGTAAAAGTCAAGATGAAAGACGGGGTATGTGTTTCTATTTGGTTT
AAGATAGCATGAAATTAAAGTATATTTTCAAAGAACAAGCCACTGTCTTT
CTGTAGAAACTAGAGGGGAGAGTCCAAGTATACATTGGCTGTGTGAGTCA
CACAAAACTTCTGTTTTCAAATGATGAAAGAAAATATCTCCAAACAAAAT
GTAAACTCTAAAAGTATTTTCTTGTGGCACAAATTACTTTGCTTATTTTT
CCTAATGCAGCAACACATACCAACCCCTTTGGGGGATTTTAGAAAGGAAG
TCAACTTCCACATTATTTCAATTCTTATTTATTTATCCCGTGAAAACTTC
ATGATGATAATTCTTGGGTCAGATTCTTTAGCTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_l03.b1 MSMg01no214_l03.b1 CHROMAT_FILE:
MSMg01no214_l03.b1 PHD_FILE: MSMg01no214_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:06 2005
         (687 letters)



>mm_chr2_16139930_16141016
          Length = 1087

 Score = 1251 bits (647), Expect = 0.0
 Identities = 674/683 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaggctgtgccttcaactctgacttgaaattccagtttgccacccagctgccag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 gaattcaaggctgtgccttcaactctgacttgaaattccagtttgccacccagctgccag 828

                                                                       
Query: 65  gcttgacactacccccacatagatacaactggagaatctcaacttattatgtacatatat 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 gcttgacactaccaccacatagatacaactggagaatctcaacttattatgtacatatat 768

                                                                       
Query: 125 attcatacacacactcaatgtttcacttaaggcttgtgagtctgtctctcctttatgtta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 attcatacacacactcaatgtttcacttaaggcttgtgagtctgtctctcctttatgtta 708

                                                                       
Query: 185 aaagctcttttaagtctaaactgctctatattaatacctgtctacaaatattgcccagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 aaagctcttttaagtctaaactgctctatattaatacctgtctacaaatattgcccagtt 648

                                                                       
Query: 245 tatttttaaggcacagaaaacaattgaaaattgcttcatgaatacaaacctattaatggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tatttttaaggcacagaaaacaattgaaaattgcttcatgaatacaaacctattaatggg 588

                                                                       
Query: 305 actgcatttaaaatgtactttttttcatatggcataccatattttaaaccatattcccct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 actgcatttaaaatgtactttttttcatatggcataccatattttaaaccatattcccct 528

                                                                       
Query: 365 tacttcatgacatggagatgagtatttgctaactaatatgattggagtttatgactagag 424
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 527 tacttcatgacatggaaatgagtatttgctaactaatatgattggagtttatgactacag 468

                                                                       
Query: 425 ttggagaacttagtgtgtctcatcaagcaagtcaaaggaataatttaaggaaaatatctt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ttggagaacttagtgtgtctcatcaagcaagtcaaaggaataatttaaggaaaatatctt 408

                                                                       
Query: 485 gtctttcattgctctgagatatattggtgtcacatgtctaagtgaccactaagtcaggcc 544
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 407 gtcttttattgctctgagatatattggtgtcacatgtctaagtgaccactaagtcaggca 348

                                                                       
Query: 545 tacagaacatgatatatcttttaaaatgtcataccttcttagggaagtccttatcttgat 604
           ||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 347 tacagaacatgatatttcttttaaaatgtcatgccctcttagggaagtccttatcttgat 288

                                                                       
Query: 605 gagtttctggaagtcagctccttttactatttggatgacctgtagtttacaccagggatg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gagtttctggaagtcagctccttttactatttggatgacctgtagtttacaccagggatg 228

                                  
Query: 665 gggaaatgtgccctgtgttgcaa 687
           || ||||||||||||||||||||
Sbjct: 227 ggaaaatgtgccctgtgttgcaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no214_l03.g1 MSMg01no214_l03.g1 CHROMAT_FILE:
MSMg01no214_l03.g1 PHD_FILE: MSMg01no214_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:06 2005
         (660 letters)



>mm_chr2_15979341_15980400
          Length = 1060

 Score = 1274 bits (659), Expect = 0.0
 Identities = 659/659 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcctatctataaatttgattacatttgcatcagtgaatgcaattgctgcttttccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcctatctataaatttgattacatttgcatcagtgaatgcaattgctgcttttccta 260

                                                                       
Query: 61  tggctctaaatatttgactttcaatgtcaagttagaaggtagcatagaaaaagcttgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggctctaaatatttgactttcaatgtcaagttagaaggtagcatagaaaaagcttgaga 320

                                                                       
Query: 121 ttgaattatattcatttgcattttgcatgttataacagttaggaactaaatgataaaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaattatattcatttgcattttgcatgttataacagttaggaactaaatgataaaatc 380

                                                                       
Query: 181 tagatgtattatccaactatataaactagttatttcttcacatccaggttaagaccagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagatgtattatccaactatataaactagttatttcttcacatccaggttaagaccagta 440

                                                                       
Query: 241 gatttcacctggttaacatgcactgaaatgcccatgtatgtaaaagtcaagatgaaagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatttcacctggttaacatgcactgaaatgcccatgtatgtaaaagtcaagatgaaagac 500

                                                                       
Query: 301 ggggtatgtgtttctatttggtttaagatagcatgaaattaaagtatattttcaaagaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggggtatgtgtttctatttggtttaagatagcatgaaattaaagtatattttcaaagaac 560

                                                                       
Query: 361 aagccactgtctttctgtagaaactagaggggagagtccaagtatacattggctgtgtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagccactgtctttctgtagaaactagaggggagagtccaagtatacattggctgtgtga 620

                                                                       
Query: 421 gtcacacaaaacttctgttttcaaatgatgaaagaaaatatctccaaacaaaatgtaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcacacaaaacttctgttttcaaatgatgaaagaaaatatctccaaacaaaatgtaaac 680

                                                                       
Query: 481 tctaaaagtattttcttgtggcacaaattactttgcttatttttcctaatgcagcaacac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctaaaagtattttcttgtggcacaaattactttgcttatttttcctaatgcagcaacac 740

                                                                       
Query: 541 ataccaacccctttgggggattttagaaaggaagtcaacttccacattatttcaattctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ataccaacccctttgggggattttagaaaggaagtcaacttccacattatttcaattctt 800

                                                                      
Query: 601 atttatttatcccgtgaaaacttcatgatgataattcttgggtcagattctttagctat 659
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atttatttatcccgtgaaaacttcatgatgataattcttgggtcagattctttagctat 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |