Query= MSMg01no215_j08.b1 MSMg01no215_j08.b1 CHROMAT_FILE:
MSMg01no215_j08.b1 PHD_FILE: MSMg01no215_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:18 2005
(226 letters)
>mm_chr2_22502023_22502648
Length = 626
Score = 406 bits (210), Expect = e-118
Identities = 219/222 (98%)
Strand = Plus / Plus
Query: 5 gaattcatgtgatgtgaaaggagatcattggaaaaggaagggaaacaaccagaggggaac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgtgatgtgaaaggagatcattggaaaaggaagggaaacaaccagaggggaac 264
Query: 65 agaaggcaggagagagccctagaagagatggatcaaggaaaacaaaatacccatgagaat 124
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaaggcaggagagaggactagaagagatggatcaaggaaaacaaaatacccatgagaat 324
Query: 125 gtcacagtgaaacttattagtttctatgctaataaaaaaaatcagaagaaaacaaggaag 184
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcatagtgaaacttattagtttctatgctaataaaaaaaatcagaagaaaacaaggaag 384
Query: 185 ggaggaaggaaggaaggaaggaaggaaggaaggaaggaagga 226
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggaggaaggaaggaaggaaggaaggaaggaaggaaggaagga 426
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space: 133889
Effective search space used: 133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no215_j08.g1 MSMg01no215_j08.g1 CHROMAT_FILE:
MSMg01no215_j08.g1 PHD_FILE: MSMg01no215_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:18 2005
(290 letters)
>mm_chr2_22597905_22598594
Length = 690
Score = 514 bits (266), Expect = e-150
Identities = 284/290 (97%), Gaps = 2/290 (0%)
Strand = Plus / Minus
Query: 1 agagggtgggtgtttctttcctgtgtgta-cttgattcagaattgaatccacacaaaaga 59
||||||||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||
Sbjct: 393 agagggtgggtgtttctttcctgtgtg-accttgattcaaaattgaatccaaacaaaaga 335
Query: 60 acacattaagaagaaaataaagcaaatgcacaggttaccttggaggcctgcttagtgttg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 acacattaagaagaaaataaagcaaatgcacaggttaccttggaggcctgcttagtgttg 275
Query: 120 ctccctagtctagtttttaaagatatatttatttcttttatgtatatgagtactttgtca 179
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 274 ctccctagtctagtttttaaagatatatttatttattttatgtatatgagtactttgtca 215
Query: 180 ctctcttggacatgtgtgatggtttgtatattcttgggccagggagtggcaccatttgga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ctctcttggacatgtgtgatggtttgtatattcttgggccagggagtggcaccatttgga 155
Query: 240 ggtgtggccttgttggaataggtgtgtcactgtgggtgtgggcttaagat 289
|||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 154 ggtgtggccttgttggaataggtgtgtcactgtgagtgtgggcttaagat 105
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
