Query= MSMg01no216_d03.b1 MSMg01no216_d03.b1 CHROMAT_FILE:
MSMg01no216_d03.b1 PHD_FILE: MSMg01no216_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:05 2005
(312 letters)
>mm_chr2_115954011_115954726
Length = 716
Score = 584 bits (302), Expect = e-171
Identities = 308/312 (98%), Gaps = 4/312 (1%)
Strand = Plus / Plus
Query: 5 gaattcttccgttacccataatcctactgcctcctgcctccacttctctgcttcccatct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttccgttacccataatcctactgcctcctgcctccacttctctgcttcccatct 264
Query: 65 ttatatcacctcaaaaaaaaaaaa----cccacacacagacacacagacattcttttcaa 120
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 ttatatcacctcaaaaaaaaaaaaaaaacccacacacagacacacagacattcttttcaa 324
Query: 121 ccaagttctcctccccacttaaaccacagaaatcccttctcaatatgtatagaggcctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaagttctcctccccacttaaaccacagaaatcccttctcaatatgtatagaggcctct 384
Query: 181 ctcttgaagtgggatgtcatacttgtcctaaatataataaagtgctgtcttcaaggcgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcttgaagtgggatgtcatacttgtcctaaatataataaagtgctgtcttcaaggcgtt 444
Query: 241 tctgcatccaagacactccccagaaacctgccgaaccctcccatctaaccagtctgaatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctgcatccaagacactccccagaaacctgccgaaccctcccatctaaccagtctgaatg 504
Query: 301 tcacgaatcata 312
||||||||||||
Sbjct: 505 tcacgaatcata 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 716
Length adjustment: 9
Effective length of query: 303
Effective length of database: 707
Effective search space: 214221
Effective search space used: 214221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no216_d03.g1 MSMg01no216_d03.g1 CHROMAT_FILE:
MSMg01no216_d03.g1 PHD_FILE: MSMg01no216_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:06 2005
(629 letters)
>mm_chr2_116041693_116042721
Length = 1029
Score = 1062 bits (549), Expect = 0.0
Identities = 555/557 (99%)
Strand = Plus / Minus
Query: 1 ttctcacacattcttccaacttttgccttatttttctgttccccacttgaaaccaagtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttctcacacattcttccaacttttgccttatttttctgttccccacttgaaaccaagtaa 498
Query: 61 atattcttaaattgactgtacttactgtttctaacacctaattttcaatctacctcagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atattcttaaattgactgtacttactgtttctaacacctaattttcaatctacctcagct 438
Query: 121 cacggagtcctctctctacatagagagaagctcctttttcatgagcaacaacttgctttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cacggagtcctctctctacatagagagaagctcctttttcatgagcaacaacttgctttc 378
Query: 181 atcgctgtcctctcgagggtcctgcagcaccatacctagaacaaggtttctcactgtact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atcgctgtcctctcgagggtcctgcagcaccatacctagaacaaggtttctcactgtact 318
Query: 241 tggccacattccagtatcttttgctgggtttccccggtttgtcagagtggtttgagcttg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 317 tggccacattccagtatcttttgctgggtttccccggtttgtcagagtggtttgagtttg 258
Query: 301 tctggagtacaccaaggttgttcgtaacaagctttcagggaggaaccctgagtctccagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tctggagtacaccaaggttgttcgtaacaagctttcagggaggaaccctgagtctccagt 198
Query: 361 actgtctatgtactgatatttctcaggttctacttcttgtgactggctgcccttgagccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 actgtctatgtactgatatttctcaggttctacttcttgtgactggctgcccttgagccc 138
Query: 421 tggactcctcagtctaactgcctacaaggcattgtatttcactgtcgtgcagacatctca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tggactcctcagtctaactgcctacaaggcattgtatttcactgtcgtgcagacatctca 78
Query: 481 ttctgaatgcaaactaatacacatatagcagaaccactggattcctcgaaaacgatatga 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 77 ttctgaatgcaaactaatacacgtatagcagaaccactggattcctcgaaaacgatatga 18
Query: 541 cgcttaccaacgccttt 557
|||||||||||||||||
Sbjct: 17 cgcttaccaacgccttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
