Query= MSMg01no216_h16.b1 MSMg01no216_h16.b1 CHROMAT_FILE:
MSMg01no216_h16.b1 PHD_FILE: MSMg01no216_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:30 2005
(273 letters)
>mm_chr2_174375062_174375735
Length = 674
Score = 507 bits (262), Expect = e-148
Identities = 268/270 (99%), Gaps = 1/270 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtccaagactttggatctggataatccctttgcataata-ttttttttgttta 63
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 205 gaattcagtccaagactttggatctggataatccctttgcataatatttttttttattta 264
Query: 64 caagttcctcacaataaagttttagttaaaaaacaatcttttaaaaaatatgcctcaccc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caagttcctcacaataaagttttagttaaaaaacaatcttttaaaaaatatgcctcaccc 324
Query: 124 tcagttggttgaatctttaggtatggagagccaactgtatcctccctccctcctttcttc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcagttggttgaatctttaggtatggagagccaactgtatcctccctccctcctttcttc 384
Query: 184 cctccgtcctttccttctttgagaaggaactcttggtgtagcactggctggcctggaact 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctccgtcctttccttctttgagaaggaactcttggtgtagcactggctggcctggaact 444
Query: 244 cacaattctcctgcctctgatccttgaact 273
||||||||||||||||||||||||||||||
Sbjct: 445 cacaattctcctgcctctgatccttgaact 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 674
Length adjustment: 9
Effective length of query: 264
Effective length of database: 665
Effective search space: 175560
Effective search space used: 175560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no216_h16.g1 MSMg01no216_h16.g1 CHROMAT_FILE:
MSMg01no216_h16.g1 PHD_FILE: MSMg01no216_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:30 2005
(381 letters)
>mm_chr2_174474724_174475504
Length = 781
Score = 661 bits (342), Expect = 0.0
Identities = 369/380 (97%), Gaps = 4/380 (1%)
Strand = Plus / Minus
Query: 2 tctgaagaaaatactagaaggatgatccaaaatgcattcccatatgaaatatgggtcaat 61
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 481 tctgaagaaaatactagaaggatgatccaaaatgcattcagaaatgaaatatgggtcaat 422
Query: 62 tccataggccaagatgaataaaatggctttaaaaactaaatgctagacagaacaccgtat 121
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 421 tccataggccaagatgaataaaatggctttaaaaactaaatgctagacagaagaatgtat 362
Query: 122 acacagcttttaacatgtaaagaatctatactatctagactctcacaggatcctatatat 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acacagcttttaacatgtaaagaatctatactatctagactctcacaggatcctatatat 302
Query: 182 tatattcatcatttgaagattcaaaacagctaacattaacaagcatcaaagaagggtgag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tatattcatcatttgaagattcaaaacagctaacattaacaagcatcaaagaagggtgag 242
Query: 242 cctcattcacataatgtaatacctcacaacaatgtcaggaagatggatagtggacaacta 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cctcattcacataatgtaatacctcacaacaatgtcaggaagatggatagtggacaacta 182
Query: 302 gatagatagatagatagatagatagatagatttatagatagatagatagatagatggatg 361
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 181 gatagatagatagatagatagatagatagat----agatagatagatagatagatagatg 126
Query: 362 gacgaatgtgatacattata 381
||||||||||||||||||||
Sbjct: 125 gacgaatgtgatacattata 106
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space: 287184
Effective search space used: 287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
