Query= MSMg01no217_g09.b1 MSMg01no217_g09.b1 CHROMAT_FILE:
MSMg01no217_g09.b1 PHD_FILE: MSMg01no217_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:55 2005
(372 letters)
>mm_chr2_162921557_162922325
Length = 769
Score = 605 bits (313), Expect = e-177
Identities = 344/359 (95%), Gaps = 12/359 (3%)
Strand = Plus / Plus
Query: 17 gaattctgt-atcagcatgagttctttcc-aatcccttatcaataatggctcaggaagca 74
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 220 gaattctgtaatcagcatgagttctttccaaatcccttatcaataatggctcaggaagca 279
Query: 75 gacaaattgctcaggtttcaatcctcctgcctagttgggcagtggtggcttacgccttta 134
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 280 gacaaattgctcaggtttcaatcctcctgcctagttgggcagtggtggcttacaccttta 339
Query: 135 aacccagcacttaggaggctggggcaggtggatttctaagtttggggccagcctggtcta 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aacccagcacttaggaggctggggcaggtggatttctaagtttggggccagcctggtcta 399
Query: 195 cagagtgagttccaggacaaccagggctacacagagaaacaaaacaaaacaaaacaccca 254
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 400 cagagtgagttccaggacaaccagggctacacagagaaacaaaacaaaaca-----ccca 454
Query: 255 aaacaaaaacaacaacaaaaaa-ccctgagttcaattcccagcacccaagacagtgcata 313
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 455 aaacaaaaacaacaacaaaaaaaccctgagttcgattcccagcacccaagacagtgcata 514
Query: 314 tgtgatatatacaatcaatcactcaatcacataaataaaaaataaaatcaatcctcctg 372
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 515 tgtgatatatacaatca----ctcaatcacataaataaaaaataagatcaatcctcctg 569
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 769
Length adjustment: 9
Effective length of query: 363
Effective length of database: 760
Effective search space: 275880
Effective search space used: 275880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no217_g09.g1 MSMg01no217_g09.g1 CHROMAT_FILE:
MSMg01no217_g09.g1 PHD_FILE: MSMg01no217_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:55 2005
(383 letters)
>mm_chr2_163031630_163032417
Length = 788
Score = 627 bits (324), Expect = 0.0
Identities = 370/390 (94%), Gaps = 11/390 (2%)
Strand = Plus / Minus
Query: 1 aatcctccgtggatgaaacatacatttcccagtcccaaaagcacgacagagagagatcca 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 587 aatcctccgtggatgaaacatagatttcccagtcccaaaagcacgacagagagagattca 528
Query: 61 caaggaggccggactgctgtcctgctgtgaattgagaaacttggatccaacctcatctct 120
||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 527 caaggaggctggactgctgtcctgctgtgaattgagaaacttggattcagtctcatctct 468
Query: 121 gactttcacctgctactccatgactgacttttgcc---tt-ctgtgaagcagagatcacg 176
||||||||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct: 467 gactttcacctgctactccatgactgacttttgccgtgttgccgtgaagcagagatcacg 408
Query: 177 ggaccccagatcctccatgccagaagccaggagccccggtgcttaccaaacagttactac 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ggaccccagatcctccatgccagaagccaggagccccggtgcttaccaaacagttactac 348
Query: 237 at----tttttaaaaaaaagaataacgtgcttgctttatacctactagacaattttttct 292
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 attttcttttt---aaaaagaataacgtgcttgctttatacctactagacaattttttct 291
Query: 293 catgcatgctaacattgctgtaattaataaattacacaatttttttgaagctaaaatgaa 352
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 290 catgcatgctaacattgctgtaattaataaattacacaagtattttgaagctaaaatgaa 231
Query: 353 gctcagtggctttttatcattgtgtgtttg 382
||||||||||||||||||||||||||||||
Sbjct: 230 gctcagtggctttttatcattgtgtgtttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 788
Length adjustment: 9
Effective length of query: 374
Effective length of database: 779
Effective search space: 291346
Effective search space used: 291346
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
