BAC Information

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BAC

Clone NameMSMg01-217G11
Chromosome2 (Build37)
Map Location 25,560,005 - 25,740,272
singlet/doubletdoublet
Overlap geneBmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1
Upstream geneCacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13
Downstream geneCamsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217G11.T7 (MSMg01no217_g11.b1)MSMg01-217G11.TJ (MSMg01no217_g11.g1)
ACCAG396941AG396942
length1,3041,429
length of high quality
(start - end)		279 (113 - 391)259 (71 - 329)
definitionCHROMAT_FILE: MSMg01no217_g11.b1 PHD_FILE: MSMg01no217_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:55 2005CHROMAT_FILE: MSMg01no217_g11.g1 PHD_FILE: MSMg01no217_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,560,005 - 25,560,283)(25,740,014 - 25,740,272)
sequence
NNTTGCTATGGGCGCTAAGACTACTAAGGGAGAGGATCCGCGGAATTCAG
CAGGACAGGAAGTGCCTAGGCGTCTTGCCTTTCTGCCAGCTACCCTGCAG
GGGAGCCGTCTCTGAAACTCCTTGGGCTTAATTTCTGCTGGAAGGAGAGC
TTCAGGAAGAGAGACCACTTCTTCCTTCCCGAACTCTGAACCCAGTCACT
TCAAAGGCCTCACTGACCAACCAAGCATCTTCTGGTTTACTGAGGATTGT
TTGCCCCTTCTGAGCTTTTGCAGTTGGTCTGCTCACATGTTAGGGGCTGG
GCAGAGAGCAAGATAGAGCCTAGGGTTCTTAAAAATGTTGCTATTACACT
ACTTGTGTTTATGCAGTCTTGCACAAGCCTCGGCCTAGGTGTGGATTTTT
TTTTAGGGCTTTATAGAGGCAATTCTCTTTCCAATTTTACAAGGTCTTTT
TGTCTTCCCCCCCCCCCCAGGNNGNGNNTGGNNAAAAAAAAAAGGGAGGG
NNGGNNNNNNNNNGNNGGNANNNAGNNAGGNNNNGAANAAAANANNNNAA
GGGANNANAAGAAAGNGGNNANNNAGNNNAAGNNGNANGNANGGNNNAGG
AGGNNNNNAANANANANNNNAAGAAAGANANNAAAGGNNNNAGNNAAAAN
AANNAAAAAAAAANNNNAGGGNAAAANNAAAAANAAAGAAANGGGGAGGA
AANNAGANAAAAGAGNNNAAGGNNAGNNGGAAAGGNANANNGGGGANAGA
NAAAGAAANAAAGAGGAAAGGNNNGGGAAANAAAAANAAAAAAANAAGGA
AANAAAAAAAAAANNNNAGGGGAAAAGAGAAGGANAAAGGAAAAAGNGGA
GGAAGAAANAGGAGGGGAAAAAGGGANNAAAAAAGAGGAAAAAAGAGGAA
AGNNAGGGAAAAGAAAGAAAAAAAAGGGAAAGAAAAAGGANAAAAGGGAA
AAAAAAAAAGGAGGGAAAAAAAAAAAAAAGGGAAAAAAAAAAAAAAGGAA
AAAAAAAAAAAGGAAAAAAGGAAAGGAGAAAGAAAAAAAAGGGAAAAAGG
GGAAAAGAGGAGAAAGAGAAAAGGGGGGGGAGGGAAAAAAAAAGAAGGGA
AGAGGAAAAAAAAGAAAGAAGGAAAGAGGGGGAAAAAGAGAAAAAAGAGG
AAAAAAGAGGAAAGGAAGGGAAAAAAGAAAAAAGAGAAGGGAAGAAAAAA
AAGGAGNGGAAAAAAAAAAGNNGGGAGAGAAAAGAGAAGAAAGAGGAGAG
AAGAAAAGGGAAAGAGAAAAGAGGAAAAAAGAAGGGGAGGAAAGAAAAAG
AGAA

NNAAACGATGGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTTTTACTTTTAAATTTTAATGGCCTGTG
GCCACCCACTTCCTCTAGCACCACACACCCCAGGGATTAAAAGTATCCAT
TTTACTCCAACCTATGTTTAAGATACCCTAAGATGAAGACGCATCGCACA
GCCCTACGGGAGCAGAGGGAGTTTATGAATGGCCTGCCCCTCTTACAGCC
TCTGCTCAGAGGCACCTTTGGACCTATAGGATCTAGGCCTGAGATGGCCT
TCTGGTTGCACTGACTTTGACCCGTGGGGTGTTGCTTGTCCTGGCCCCCA
AACCCATCTTCTCTCTGATTTCATTCTTAAGGTGATTCGTGAGACACATT
TTTTTTTTTTTTTTCATACTGCGCCAAGTTTTATTGTCTGAGAAAACCCC
TTTTTTTTTTCCCGCGCCCCCCCCAAGANNGNGNNTTNNTAAAAAAAAAG
GAGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNN
NNNNNNNANNNNNNANANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAANNAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAANNAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAANNAAANNAAAAAAAAAAAAAAAAAAAANAANAAA
AAAAAAANAAAAAAAAANAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAA
TTTAAATAATTATATATATATAATTATTATTTATTTATATATATATTTTT
TTTATTTTTTTTATTTTTTTATATTTTTATTTTATTATATTTTTATTATT
TTTTTATATTTTAATAAATTTTATATTTATTTATTTTTTTTTTTATATTT
TTATTTTTTATTANTATTATATATTTATTAATTTTTTTATATTTTTTTTA
TTTTATATTTTATTTNTATATATTTATTNTTTTTTTATTTNTTTATAATT
TATTTATTTTATTATTGTTATTTTATTTTTTTTTTATTATTTTTTATAAA
TTTTTTTTTTTTATTAATTTTTTTAGTTTTGATTGTATATTTTGTTGTTG
TTTAATATTTGTGTTTTATTAGTTTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_g11.b1 MSMg01no217_g11.b1 CHROMAT_FILE:
MSMg01no217_g11.b1 PHD_FILE: MSMg01no217_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:55 2005
         (279 letters)



>mm_chr2_25559805_25560483
          Length = 679

 Score =  485 bits (251), Expect = e-142
 Identities = 272/279 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaaactccttgggcttaatttctgctggaaggagagcttcaggaagagagaccacttct 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tgaaactccttgggcttaatttctgctggaaggagagcttcaggaaaagagaccacttct 260

                                                                       
Query: 61  tccttcccgaactctgaacccagtcacttcaaaggcctcactgaccaaccaagcatcttc 120
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccttcttgaactctgaacccagtcacttcaaaggcctcactgaccaaccaagcatcttc 320

                                                                       
Query: 121 tggtttactgaggattgtttgccccttctgagcttttgcagttggtctgctcacatgtta 180
           ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 tggcttactgaggattgtttgccccttctgaccttttgcagttggtctgctcacatgtta 380

                                                                       
Query: 181 ggggctgggcagagagcaagatagagcctagggttcttaaaaatgttgctattacactac 240
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 381 ggggctgggcagagagcaagatagagcctagggcacttaaaaatgttgctattacactac 440

                                                  
Query: 241 ttgtgtttatgcagtcttgcacaagcctcggcctaggtg 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtgtttatgcagtcttgcacaagcctcggcctaggtg 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no217_g11.g1 MSMg01no217_g11.g1 CHROMAT_FILE:
MSMg01no217_g11.g1 PHD_FILE: MSMg01no217_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:55 2005
         (259 letters)



>mm_chr2_25739814_25740472
          Length = 659

 Score =  462 bits (239), Expect = e-135
 Identities = 254/259 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttttacttttaaattttaatggcctgtggccacccacttcctctagcaccacacaccc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 459 ttttttacttttaaattttaatggcctgtggccacccacttcctctagcaccacacaaag 400

                                                                       
Query: 61  cagggattaaaagtatccattttactccaacctatgtttaagataccctaagatgaagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cagggattaaaagtatccattttactccaacctatgtttaagataccctaagatgaagac 340

                                                                       
Query: 121 gcatcgcacagccctacgggagcagagggagtttatgaatggcctgcccctcttacagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 339 gcatcgcacagccctacgggagcagagggagtttatgaatggcctgcccctcttatagcc 280

                                                                       
Query: 181 tctgctcagaggcacctttggacctataggatctaggcctgagatggccttctggttgca 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tctgctcacaggcacctttggacctataggatctaggcctgagatggccttctggttgca 220

                              
Query: 241 ctgactttgacccgtgggg 259
           |||||||||||||||||||
Sbjct: 219 ctgactttgacccgtgggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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