CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTAAAGATCTCAAATTTAACGAGAAAGTTGAAAACTACAACCCC
ATGAACATGGATCTCTAAAGTGTACGGAGAAATGTCTTTTTAGTTATGGT
AAGCTTTGTAATTTACTAGAAACCAGGTTACCATCATTGTGTGCAAGCTG
TTCAGCAGAGGGTTTAATAGTTTTCTTTTCTAGGGTCCTTGTGAGAAATG
AATTCCCTAACTGTTGCAAGTGATCAAATATCTATAAGATTTCTGCTATT
TGCTCCCTCATCCAGCAGATAAACATCTTGTTTATATGCATTATAACCCT
GTGAAGGAAGTAGTTTTAATCNTCCTTTTGCANTTCCCTTTAAGGAGGCA
TGTTTACTAAACCCTTCCCCCCCCAAAAAACAAAAACTGGGGAGTTTTAC
TATTTTTCCTGCACACAGATTTACTTTGCTTGCATTTATTAAATTATGTT
TATTATATTTAGAAATATTTTTCTGAAATAAAATGGGTAGTCTTTTAAAC
AAAGAATATCTACTCAACTCAAAACAACTACAACTTATAAGTAATACAAA
AGAAAAAACAAATACAATATGAGATGAACAGATGAGGACCTTGGAAACTG
ATCCCCCTAGTCTCTTTAATAGGTAGTTCCCAGTAATGTGCTTCTGCCCT
TTCGTGAAGTGCCTACCTTTGTAACTGTTTTCAATATCGTTTGAAATTTC
TTT

ATTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTACCTACCTGACAATCTTC
AGGCACTAATGCTCCTGGGGAAAGCATAGGATGGGGACTTGTTCTAAGGA
CAAAAGACACTTGTCACTTAAAGAAAAGACAAACAAATTGTCTGAAGCCC
TCAGAGAAGGTTGTGCCTCTATATAAAAACGCTCTACACAAAATCTGACC
TTTCCCAGAGCATCTGTGTAGTCAAAGGCTCTGAGTGATTGACTGCAATG
ATAGAAGTCAAATGCTAATGAGTTTATAAACATGACTGAGATGTTCTGAT
CCATTCTTACTTATTTGTTACTTCCCCACCCCCCCTAATGCTACAAAATA
CCAACTTACAACTGTGTAACTCACACACGAAATCATTCCATGCTTTATAT
TAATTCATGGCTTCTTTTAAGAGTATATTAATCAGCAATTCATTAATCAG
CATTTTATTTAACCTTATCTTTGATTTANAAGTGAAAAGAACACATGAAA
AAGTCTTACTAGCCTTCATTTCTCGTCTAATAGATTTTTTTTAAAAATCA
GCTCTAAAAAAATAAATAAAAACAATAGACATGAATAAAAGAAAAATACN
AGAATAAAAGAAAATAATTTTCAATATCTGTATATTTAACATTAAACAAA
G

Query= MSMg01no218_k16.b1 MSMg01no218_k16.b1 CHROMAT_FILE:
MSMg01no218_k16.b1 PHD_FILE: MSMg01no218_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:45 2005
         (318 letters)



>mm_chr2_99393853_99394570
          Length = 718

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttaaagatctcaaatttaacgagaaagttgaaaactacaaccccatgaacatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 gaattctttaaagatctcaaatttaacgagaaagttgaaaactacaatcccatgaacatg 264

                                                                       
Query: 65  gatctctaaagtgtacggagaaatgtctttttagttatggtaagctttgtaatttactag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatctctaaagtgtacggagaaatgtctttttagttatggtaagctttgtaatttactag 324

                                                                       
Query: 125 aaaccaggttaccatcattgtgtgcaagctgttcagcagagggtttaatagttttctttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaccaggttaccatcattgtgtgcaagctgttcagcagagggtttaatagttttctttt 384

                                                                       
Query: 185 ctagggtccttgtgagaaatgaattccctaactgttgcaagtgatcaaatatctataaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctagggtccttgtgagaaatgaattccctaactgttgcaagtgatcaaatatctataaga 444

                                                                       
Query: 245 tttctgctatttgctccctcatccagcagataaacatcttgtttatatgcattataaccc 304
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 445 tttctgctatttgctccctcatccagcagataaacatcatgtttatatgcattataaccc 504

                         
Query: 305 tgtgaaggaagtag 318
           ||||||||||||||
Sbjct: 505 tgtgaaggaagtag 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no218_k16.g1 MSMg01no218_k16.g1 CHROMAT_FILE:
MSMg01no218_k16.g1 PHD_FILE: MSMg01no218_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:45 2005
         (289 letters)



>mm_chr2_99542197_99542885
          Length = 689

 Score =  520 bits (269), Expect = e-152
 Identities = 284/289 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattacctacctgacaatcttcaggcactaatgctcctggggaaagcataggatgggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 489 tcattacctacctgacaatcttcaggcactaatgctcctggggaaagaatgggatgggga 430

                                                                       
Query: 61  cttgttctaaggacaaaagacacttgtcacttaaagaaaagacaaacaaattgtctgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 cttgttctaaggacaaaagacacttgtcacttaaagaaaagacaaacaaattgtctgaag 370

                                                                       
Query: 121 ccctcagagaaggttgtgcctctatataaaaacgctctacacaaaatctgacctttccca 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 369 ccctcagagaaggttgtgcctctatataaaagcgctctacacaaaatctgacctttccca 310

                                                                       
Query: 181 gagcatctgtgtagtcaaaggctctgagtgattgactgcaatgatagaagtcaaatgcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gagcatctgtgtagtcaaaggctctgagtgattgactgcaatgatagaagtcaaatgcta 250

                                                            
Query: 241 atgagtttataaacatgactgagatgttctgatccattcttacttattt 289
           ||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 249 atgagtttagaaacatgactgagatgttctgattcattcttacttattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)