BAC Information

Click to search

BAC

Clone NameMSMg01-231A03
Chromosome2 (Build37)
Map Location 96,172,403 - 96,172,691
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042843
Downstream geneLOC100043267
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231A03.T7 (MSMg01no231_a03.b1)MSMg01-231A03.TJ (MSMg01no231_a03.g1)
ACCAG397962AG397963
length745719
length of high quality
(start - end)
280 (45 - 324)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no231_a03.b1 PHD_FILE: MSMg01no231_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:11 2005CHROMAT_FILE: MSMg01no231_a03.g1 PHD_FILE: MSMg01no231_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAATATTTTTAATCCCTATTTGAATATATAACCTGAATAATAAGAT
ACTCAAATAAAGGAGAATGAAACCCACAGTCTCTTTCTTCTTGTTCTTCT
CTTGTTCCTCTTATTCTTTTTGTTCTTCTTGTACTTCTTGTTCTTTTTGT
TCTTACTCTTCTTGTTCGTCTTGTTCTTGTTCTTCTTGTTCCTGTTCTTG
TTCCTGTTCTTGTTCTTGCTCGTCTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTTTTTTTCTTCTTCTCCNTCNCCCCTTCCT
TCNNTCCTTTTTTTTTTTCCCCCCCCCCCCCCCACCNTTTTACCCTTCTT
TTCTCCTTTTTTTTCCCCCCCCCCCATAAAAAAAAATACCTTTTTCCCTC
TTATTTTTCTCACCTTTTTTCCCCTTTTTTTTATTCCCTCCCTCTTTTTC
ATTTTACCCCCCTTTTATTTAATTTTTTATCGTTACCCTCCCACTCTTCC
CCTTTTCCCTCCCTTTCTTTCTCCCAATTTCAATCTCTACCCCCTTATTA
TAATCACCTTTCTTCCCCTTTCTCCCCTTTCTTTTTCTTTCCCTCCTTCC
CCCCCTTTTTTCTTCCCTCCAATTTATCACCCCCCTTTTATTTTTCCCCT
TTCCCTTATCTTTATTTCCTCTTATCTTTCACTCAGATCATCCTC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTTCCTAAAAATGTCATGAATAGA
CAATCTCAGACACAAAATCATTGACCATGAAGCATTCATCATAGGAATGA
AGAGATTGTGTAGCTTTCAAAGGGGCATGGAGGAGAGAACTGTCAAAAGG
CTGGCAGACTGTGACTGTATGAATTTGCCTTTATTTGGCCTTTAACCTCC
CCAGTGAATGCCCACAGACAGTTCTGCACTGTGGGTGAGTGCATGAAAGA
TTACATGTCTGTGAGAAGATAGAAAGAATAAAATTACAAGATAACATTGC
AAACAATAAATGAGATTTTTATGCGCCCCACCCCCTACAGCTAATTCATG
TGAGCCTTATATTTTCCAATACCCCTGACTCATAACATTTTTATTACATT
GGAAGAGGTAAAGGAAGGGTAGAGTGTGTTGTCCCGTACTATCAAATCTA
AGCTTTAATGATTGTCCATTGCTAGAGACTAATCTGGAATGGCATTTGTG
TCAGCGGCGAACTGTATTTAGAAACAGTATTGCAGTCCCCAGCCCAGTGG
AAGGATTGGATAGGATTGAATATTTGGCGTCAGAAGGAAGAGATTACTTC
GTCTGGTTTTCAGATGCTCAGTTACTTTTATCTGCCCCGTTTCCACCAGG
TCTGTCGATTTATCCGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_a03.g1 MSMg01no231_a03.g1 CHROMAT_FILE:
MSMg01no231_a03.g1 PHD_FILE: MSMg01no231_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:11 2005
         (289 letters)



>mm_chr2_96172203_96172891
          Length = 689

 Score =  520 bits (269), Expect = e-152
 Identities = 284/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttcctaaaaatgtcatgaatagacaatctcagacacaaaatcattgaccatgaagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 201 tttttcctaaaaatgtcatgaatagacaatctcagacacaaaatcattgattatgaagca 260

                                                                       
Query: 61  ttcatcataggaatgaagagattgtgtagctttcaaaggggcatggaggagagaactgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcatcataggaatgaagagattgtgtagctttcaaaggggcatggaggagagaactgtc 320

                                                                       
Query: 121 aaaaggctggcagactgtgactgtatgaatttgcctttatttggcctttaacctccccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaggctggcagactgtgactgtatgaatttgcctttatttggcctttaacctccccag 380

                                                                       
Query: 181 tgaatgcccacagacagttctgcactgtgggtgagtgcatgaaagattacatgtctgtga 240
           ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 381 tgaatgcccacagacagttctgcactgtgggtgagtgcatgtaagactacatgtctgtga 440

                                                            
Query: 241 gaagatagaaagaataaaattacaagataacattgcaaacaataaatga 289
           |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagatagaaagaaaaaaattacaagataacattgcaaacaataaatga 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)