BAC Information

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BAC

Clone NameMSMg01-231C21
Chromosome2 (Build37)
Map Location 42,704,350 - 42,704,668
singlet/doubletsinglet
Overlap genenone
Upstream geneLrp1b, LOC625094
Downstream geneLOC100041228, LOC100041245, Kynu, Arhgap15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231C21.T7 (MSMg01no231_c21.b1)MSMg01-231C21.TJ (MSMg01no231_c21.g1)
ACCAG398080AG398081
length753808
length of high quality
(start - end)
336 (46 - 381)246 (75 - 320)
definitionCHROMAT_FILE: MSMg01no231_c21.b1 PHD_FILE: MSMg01no231_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:24 2005CHROMAT_FILE: MSMg01no231_c21.g1 PHD_FILE: MSMg01no231_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGAAGGTTAATGTATAATGAAGAATCATAGTGAAATAAAACTTC
AAATTAAGAACTCAGGAAAGCACACCAAAAAGTCAGAGAAAGACCCAAGT
GTAAGAGAGATAGCAGGTCTCATAAACAAGGTAGAGGAGAGAACTGCCCT
CCTCCCTTGTGCAAAAGATCCAGAAACATGCTCACTGCATGGTCTGCCCA
TCATTGGCATGACTATGATGTGCCATGGTGAAGTCCTGGCTCATGTGGCT
ACATGTCTGTATCCATGGCTCTGCAGCATCAGAGGTCTGTATTTATTCTT
GTGATGATCAAAGATCAATTTTTTTGCCTCCCCCCCCCCTATTGCCTGTA
ACCATATTGATGTCTGAGGGCTACACACAGTTAGCTTCACCTCTCATAAG
CTGAGCCACTCAGGATTTCTGTCCCTGCCCCTTTCCTGGGCAGCAAGTAG
ATCTGGCCCCAGTGTTGGATCTGAGGTGAGTCAATGTCAAAATTCTAAAT
GCAGTAGAACTGGATCTGCCCCTTGTCTAAAGTGCCAGGTAATTTGGGTG
TGGAATAAATGCCTTCCTCCCTCCTTGCCCTTTGCCATTTATGGCACACA
GATGTGCTGGCAAAGAGGTCATAAGAGAGCAAGAATAGACCTCACCCCTG
ACCGGCTGCAGTATGTGAGAAAACAGGGCCTCTACCTTGCCTGGGCAGTA
CAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGAACCAATAATGGGAGTTTGTGAG
TTTCAGAGAAGAAGGAGGGGGAGGCGATAGGGGATTTTTCAGAGGGGAAA
CTAGGGAAGGGGATAACATTTGAAATGTAAATAAAGAAAATATCTAATTA
AAATATACCAAAAAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAAGAAGGATTTTTTTTTTTTGAAGGAAGGAAGGAA
GGAAGGAAGGAAGGGATTTANGTAGATTCCCAAGACAGGACCCCCGGAAT
AATGGAAGATAGTTAAGAATTGTTCCCCCCCCCAAAAAAAAAAAAAAAAC
ACGGGTGGGGGGGGGGATTTAACACAGTATCACTTTATACATGCGATTTA
CCGACCCTACGAATGATTCATTCATAGCAACGATATTACTGAATTATCGC
TTTACCGCTTTTCCCCCTTTTACTACCCCTATTCGCCCACTATTTTCATT
TCCGTATTCGGTGCTACATGTCCCTTTATTCCCAACACCCTCCATTTTCG
TTCCACCCTATAATTCTCTGTATTCCCTATCCCTTGCCCTGTCTTTTTTT
TCGGTTTTTTTTCCTCCCTCCTTCCGTCCTTTTTCCCTCAGTTATTTCTG
GCTCTTTTTTCCCCTCCGNTCTCCGTCCCTTATCACTTCTCCCTTCTCTC
CCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_c21.b1 MSMg01no231_c21.b1 CHROMAT_FILE:
MSMg01no231_c21.b1 PHD_FILE: MSMg01no231_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:24 2005
         (336 letters)



>mm_chr2_42704146_42704881
          Length = 736

 Score =  601 bits (311), Expect = e-176
 Identities = 317/319 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagaaggttaatgtataatgaagaatcatagtgaaataaaacttcaaattaaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagaaggttaatgtataatgaagaatcatagtgaaataaaacttcaaattaaga 264

                                                                       
Query: 65  actcaggaaagcacaccaaaaagtcagagaaagacccaagtgtaagagagatagcaggtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actcaggaaagcacaccaaaaagtcagagaaagacccaagtgtaagagagatagcaggtc 324

                                                                       
Query: 125 tcataaacaaggtagaggagagaactgccctcctcccttgtgcaaaagatccagaaacat 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 tcataaacaaggtagaggagagaactgccctcctcccttgtgcaaaagatccagaagcat 384

                                                                       
Query: 185 gctcactgcatggtctgcccatcattggcatgactatgatgtgccatggtgaagtcctgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctcactgcatggtctgcccatcattggcatgactatgatgtgccatggtgaagtcctgg 444

                                                                       
Query: 245 ctcatgtggctacatgtctgtatccatggctctgcagcatcagaggtctgtatttattct 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 ctcatgtggctacatgtctgtatccatggctctgcagcagcagaggtctgtatttattct 504

                              
Query: 305 tgtgatgatcaaagatcaa 323
           |||||||||||||||||||
Sbjct: 505 tgtgatgatcaaagatcaa 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)