BAC Information

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BAC

Clone NameMSMg01-231H11
Chromosome2 (Build37)
Map Location 155,015,124 - 155,176,297
singlet/doubletdoublet
Overlap geneItch, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1
Upstream geneU46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, LOC100043877
Downstream geneTrp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231H11.T7 (MSMg01no231_h11.b1)MSMg01-231H11.TJ (MSMg01no231_h11.g1)
ACCAG398273AG398274
length705710
length of high quality
(start - end)		229 (107 - 335)284 (58 - 341)
definitionCHROMAT_FILE: MSMg01no231_h11.b1 PHD_FILE: MSMg01no231_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:46 2005CHROMAT_FILE: MSMg01no231_h11.g1 PHD_FILE: MSMg01no231_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,015,124 - 155,015,352)(155,176,014 - 155,176,297)
sequence
ACTCACTATATCGAGAGGATCCGCGGAATTCTGCAAGAATATCGTTGTAT
TGTGTATGCTAGGTAAGTCATACTGGAATTCATACATTAGCTCTGTTATC
CCGAGCTTATATTGTGAATTATATTTTTTTAATTATTTATTTTTATTCTT
TATAGAATCAAGATTTGTTTGCTACATCACAAAACAAAGAATTTGATCCG
CTTGGTCCGTTGCCCCCTGGATGGGGTAAGCACATCAGTTTCTTAATTTA
GAAAATCTGTTACTTATAAAACCAGGACTAGAGATGTTTGTCCTGCTATG
TTATAGCTCTGAGTCCAGTCACTAGCATTGCAAAATAGTTTTTAGAAACC
CATTATCAATATAATCATCTGGAAGGAATGCTAAGCTTATAGAACACCCC
CATTTTCACAAGTTTATATACTTGTAGGGGCTCCAGTGTCTGTTACCATC
ACCAAGTACTTGCGGCTGGATGCTCTCTAATGAACAGAAGCTGAAATGGC
TTAAGTAGGAAAATCGTTTGTCATGCAAACAGGAGTTGGATTCCTAAGAC
CATTGTGAAGAGCCAGGTCTGATAGTACATGACGGTTACCCCATGGAGGT
TGAGGACATCATCAGCTCTTTGAAGTTTATTGTTTAACAAGCCTAGTCTA
ATTGTTGACCTCCATGGTCAGAGAGAGACTGTCTAATAAATGAACGCAAG
CCCGC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCATAAATACACCAGGTAGTCTAGAACTTTTAGTATTGCCTCTG
TCTCCCCAGTACTGGGATTACAGGTTCGAGCCACCATGCACAGCCTGATT
ATTCTTTTAAACATTGACTGAATCATTAATAGAGTCTGAAGAGAATTTTG
ACAGTCTGCTAGCTGAGATGGGAAATACACACTTTAGACCCCGAGAAAGC
TTTCATACATGTCACCAACTCTTCTAAATGACAACAATTAATTAGGGATG
GCTTACAGTTTCAGAGGTTTAGTTCATTATCATAGGACAGGATTTTTGTC
ACTCCGCCCCCCCACATGGTGCTGGAGAATCCAAGAATTCTATATCTCCA
CCCGAACGCAAACAGTAGGAGACTGTCTTCTACAGCCAGCCAGGAGGAGG
GTCTCTTTCCACACTGGTCTCTTTCCACACTGGGCATAGCTTGAGCATAT
AGACATCAAAGTCCACCCCCACAGTGACTCACTTTCTCTAACAAGGTCAC
ACCTCCCAATAGTGCCATTTCCTGTGGGGTCAAGCATATTCAAACCACCA
CAATACTCTAACAAGTTTACTGATGCACAGTATCAAGCACAGCCAAGTCA
CCACAGGATTGCTCTTTACTTTCTGTGGCAAGATGTTTTGGCTTATCCTG
AGGGAATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_h11.b1 MSMg01no231_h11.b1 CHROMAT_FILE:
MSMg01no231_h11.b1 PHD_FILE: MSMg01no231_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:46 2005
         (229 letters)



>mm_chr2_155014924_155015552
          Length = 629

 Score =  412 bits (213), Expect = e-120
 Identities = 225/229 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatattgtgaattatatttttttaattatttatttttattctttatagaatcaagattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatattgtgaattatatttttttaattatttatttttattctttatagaatcaagattt 260

                                                                       
Query: 61  gtttgctacatcacaaaacaaagaatttgatccgcttggtccgttgccccctggatgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttgctacatcacaaaacaaagaatttgatccgcttggtccgttgccccctggatgggg 320

                                                                       
Query: 121 taagcacatcagtttcttaatttagaaaatctgttacttataaaaccaggactagagatg 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 taagcacatcagtttcttaatttagaaaatctgttacttagaaaaccaggactagagatg 380

                                                            
Query: 181 tttgtcctgctatgttatagctctgagtccagtcactagcattgcaaaa 229
           |||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgtcctgcaagggtatagctctgagtccagtcactagcattgcaaaa 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no231_h11.g1 MSMg01no231_h11.g1 CHROMAT_FILE:
MSMg01no231_h11.g1 PHD_FILE: MSMg01no231_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:46 2005
         (284 letters)



>mm_chr2_155175803_155176486
          Length = 684

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataaatacaccaggtagtctagaacttttagtattgcctctgtctccccagtactggga 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 495 cataaatacaccaggtagtctagaacttttagtattgcctctgactcccgagtactggga 436

                                                                       
Query: 61  ttacaggttcgagccaccatgcacagcctgattattcttttaaacattgactgaatcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttacaggttcgagccaccatgcacagcctgattattcttttaaacattgactgaatcatt 376

                                                                       
Query: 121 aatagagtctgaagagaattttgacagtctgctagctgagatgggaaatacacactttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aatagagtctgaagagaattttgacagtctgctagctgagatgggaaatacacactttag 316

                                                                       
Query: 181 accccgagaaagctttcatacatgtcaccaactcttctaaatgacaacaattaattaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 accccgagaaagctttcatacatgtcaccaactcttctaaatgacaacaattaattaggg 256

                                                       
Query: 241 atggcttacagtttcagaggtttagttcattatcataggacagg 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 atggcttacagtttcagaggtttagttcattatcataggacagg 212


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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