BAC Information

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BAC

Clone NameMSMg01-231K16
Chromosome2 (Build37)
Map Location 76,840,896 - 76,984,123
singlet/doubletdoublet
Overlap gene2610301F02Rik
Upstream genePde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn
Downstream geneSestd1, LOC623706, LOC667906, Zfp533, BC003993, LOC667920
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231K16.T7 (MSMg01no231_k16.b1)MSMg01-231K16.TJ (MSMg01no231_k16.g1)
ACCAG398412AG398413
length715720
length of high quality
(start - end)
328 (45 - 372)121 (243 - 363)
definitionCHROMAT_FILE: MSMg01no231_k16.b1 PHD_FILE: MSMg01no231_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:00 2005CHROMAT_FILE: MSMg01no231_k16.g1 PHD_FILE: MSMg01no231_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,840,896 - 76,841,219)(76,984,007 - 76,984,123)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATCCTCAGCTCTGCAAATGAAAGGAAACCAAGCAGAATAGTTCTT
ACTCATTCCCTGGTGCAATTCACACATACCTGCTGCCTAACAGTGATAAA
GCTGACAAGAATAATTCCTTGTATTTAAAGAGACCACACAGACTTTCTCA
TTTTGAGATTCTCTATGAGATGTCTTTTCTCTGACTCCTCCACCTCCTCT
CTCTTTCCTTCTCCCCCAACCCCCTTTCTGTTTCTTCTTCTTTTCCCTTT
CCCCTGGGAATGAACCCTAAGAAAGGATTCTACCACTAAACTTCCCCAGT
CTTTCCTTCCTTCCTTATTTATCTATCTACTCAAGAGGCAGGGTCTTAAT
ATACAGCTCAGCTTAGCCCCACCCTCACTGTGTAGTCCAGGCTGGCCTCA
AACTTATAAGCCTCCTGCCTCTGTCTGCTCCTGTGTGCTGGAATTAGTGG
TATGTGTCACAGAACCTGTTCCTCGTGATCCATTTTGAATTGTACTGACA
AACCAGTATTTGTGTGATTATGCAATGCGTTGCTATGGATTTGAGCAATG
TCTAGAATAAGTATTTGATTGCACATTATTAGAACTTGTTTCCAAGTCCT
TGGTGGGACTTCACAGAGCTCTGCTGTGTGTTTGGTTATGTGAACAAAGC
CTTTGAAAACTCCAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCTAGTTTGTCGTGGACTTTCTA
TCATGTTCTGTCCCAGATTTTCCCGAACAAGATGGACAAAGAGGTCTCAT
CATATGGAGACAGAGCATTTGATGCTATGGAAAGAGAGATAAGGACTTCT
TGTTTTCCAACCTGAAAGTCTGCCCTAAGCCTGGCCTAGAATGGCATATG
CTAGTGTGCAGGTTCTTAGGGGCTGGGGTATAATTGAGAGTACATGTGTG
AGACCATCACAGAATGATGCATAATTCTTCAACTCAACTATATAAAAGTG
ATGCCTTCATTTTTGTGCATTTCCCNTCATCCGCCGGATGAAGAGAAGGA
GAATGTCTACTGGCATTTGCACCAAGAAAAAAAAAACAAAGGAACTCTGG
ATTCTAACTGGCACAGGAAGAATGTCTTCATTGCTAGTCAATATGAAACC
ATTTCTCATATCAGACCTATTCAAATCATCCTCCCATTGCTGTGAAGCAA
TCGAGAGCTGTCCTGATCTATTTGAATGTCCATTATAATCAATATTGATT
ATGAAAGTATGATCTTCTACTGGAGAAGATTCATTCTACTTTTGATATGA
GGCAAGGTGTAAAGAGGATAGAAAGGATAAAAAATGGTACATAATAGCTT
ATCAGTAACTTTGCTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_k16.b1 MSMg01no231_k16.b1 CHROMAT_FILE:
MSMg01no231_k16.b1 PHD_FILE: MSMg01no231_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:00 2005
         (328 letters)



>mm_chr2_76840692_76841419
          Length = 728

 Score =  580 bits (300), Expect = e-170
 Identities = 318/324 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatcctcagctctgcaaatgaaaggaaaccaagcagaatagttcttactcattc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatcctcagctctgcaaatgaaaggaaaccaagcagaatagttcttactcattc 264

                                                                       
Query: 65  cctggtgcaattcacacatacctgctgcctaacagtgataaagctgacaagaataattcc 124
           ||||||||||  || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctggtgcaagccagatatacctgctgcctaacagtgataaagctgacaagaataattcc 324

                                                                       
Query: 125 ttgtatttaaagagaccacacagactttctcattttgagattctctatgagatgtctttt 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 ttgtatttaaagagaccacacagactttctcattttgagattctctatgagatggctttt 384

                                                                       
Query: 185 ctctgactcctccacctcctctctctttccttctcccccaaccccctttctgtttcttct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctctgactcctccacctcctctctctttccttctcccccaaccccctttctgtttcttct 444

                                                                       
Query: 245 tcttttccctttcccctgggaatgaaccctaagaaaggattctaccactaaacttcccca 304
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctttcccctttcccctgggaatgaaccctaagaaaggattctaccactaaacttcccca 504

                                   
Query: 305 gtctttccttccttccttatttat 328
           ||||||||||||||||||||||||
Sbjct: 505 gtctttccttccttccttatttat 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no231_k16.g1 MSMg01no231_k16.g1 CHROMAT_FILE:
MSMg01no231_k16.g1 PHD_FILE: MSMg01no231_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:00 2005
         (121 letters)



>mm_chr2_76983807_76984327
          Length = 521

 Score =  188 bits (97), Expect = 1e-52
 Identities = 112/117 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcatatgctagtgtgcaggttcttaggggctggggtataattgagagtacatgtgtgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ggcatatgctagtgtgcaggttcttaggggctggggtataattgagagtacatgtgtgag 258

                                                                    
Query: 61  accatcacagaatgatgcataattcttcaactcaactatataaaagtgatgccttca 117
           |||||||||||||||| || || ||  ||||||||||||||||||||||||||||||
Sbjct: 257 accatcacagaatgatacagaactcagcaactcaactatataaaagtgatgccttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 521
Length adjustment: 8
Effective length of query: 113
Effective length of database: 513
Effective search space:    57969
Effective search space used:    57969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)