CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATTCCTGGAATCCATGTAAATCTGGAAAGAGAAAACAGACTCCG
AAAAGTTGTCCTCTGAGCTCCACACGTGTGCTGTGGTATGCATCTGCATA
AATCCTGCACACACACTAATAATAAAGATGATAATGATAGTAGTCATGAA
TCAAATTATTGAGTAAGAAGAGAACTTTACGATGAATGGATTATGGCGCT
TTGGGAGCACTGTACAAAGAACTCAGAGAAGAGTGAAAAAGGAGGGGTCA
GTTGGAGCAATGAATGATATGTGTCATTCAGGCATCAGTGTATGAAAAAA
ATGTATTTTCTTTTGTTTCTCCCCCCACACCCCGTGAAGGGCAAGAGAAT
GAGCCTCAGACTTCTCACCCCCACCATGTTAACAATGGAAGGTTTCAACC
CAACATGGTCACCTCATATTTGGAGAACATGAACTCTCTAGCACTGCGTA
CCAGCTGTCACTAAAGGTGACACACAGGATATGCAATGTTGTTTGATATA
GCAAAGAAGACACAGAATATCAGTAAAATTTGAATTGCATGTAATCTTGA
AATAATATATACCCAGTGTGGTATTTGGTACATTATTTTATAGAAACACT
ATTCATTATTTGGCTAGCATATAGATCTTACTGTGCGCTTTTTATTTTAT
CTGGCAACCTTATAGTTGGTAAAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTAAATAAAAGCCGGGGACCCC
TGCAAACAGTGTGTGCAACCAACACCGATTTACAATCTGCAAACAGACTT
TCTTGCTGAACATGGAGACATGAGTTTTCTTTTCCTTCCTTCCTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTCCCCTCCTTCCT
TCCTTCTTTCTTTGCCTAAGTTAATTACAAAGTACGACTGTGAAAATAAA
CAAGCCCATTGTTTTTTATTCCCGCCCCCGACCTCCATCGTGAGTTGCCA
GTTGGCTTTCTAATCCCCCCACCCAATAACTGCTGTTAATTTGGTCACTA
TTTCAAGAACTTGGAGACTGTCAGCAAAATGCACGATGCATTACAGAACT
TATAATTGGAAGTAAAAACATCTGAAGCTTTTCTGACAGCCTAACCATAA
AGCCCTGTCGCCCTGATCAGAACAAGACAACCCAGGCAACCTTGTAGCGA
TTGGTGTACACACAATTATTGATGCCACAGAGTGTTGAGGACACTTACCT
CTGGCTTATATAAAGGCAGAGGACATTACATCTAACTGAATGAATGATCT
CATTGTGTTTATGACGTC

Query= MSMg01no231_m11.b1 MSMg01no231_m11.b1 CHROMAT_FILE:
MSMg01no231_m11.b1 PHD_FILE: MSMg01no231_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:08 2005
         (272 letters)



>mm_chr2_106484954_106485625
          Length = 672

 Score =  511 bits (264), Expect = e-149
 Identities = 267/268 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccattcctggaatccatgtaaatctggaaagagaaaacagactccgaaaagttgt 64
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccattcctggaatccatgcaaatctggaaagagaaaacagactccgaaaagttgt 264

                                                                       
Query: 65  cctctgagctccacacgtgtgctgtggtatgcatctgcataaatcctgcacacacactaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctctgagctccacacgtgtgctgtggtatgcatctgcataaatcctgcacacacactaa 324

                                                                       
Query: 125 taataaagatgataatgatagtagtcatgaatcaaattattgagtaagaagagaacttta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taataaagatgataatgatagtagtcatgaatcaaattattgagtaagaagagaacttta 384

                                                                       
Query: 185 cgatgaatggattatggcgctttgggagcactgtacaaagaactcagagaagagtgaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cgatgaatggattatggcgctttgggagcactgtacaaagaactcagagaagagtgaaaa 444

                                       
Query: 245 aggaggggtcagttggagcaatgaatga 272
           ||||||||||||||||||||||||||||
Sbjct: 445 aggaggggtcagttggagcaatgaatga 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no231_m11.g1 MSMg01no231_m11.g1 CHROMAT_FILE:
MSMg01no231_m11.g1 PHD_FILE: MSMg01no231_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:08 2005
         (287 letters)



>mm_chr2_106629608_106630294
          Length = 687

 Score =  474 bits (245), Expect = e-138
 Identities = 270/285 (94%), Gaps = 12/285 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttaaataaaagccggggacccctgcaaacagtgtgtgcaaccaacaccgatttacaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 305 tcttaaataaaagccggggacccctgcaaacagtgtgtgcaaccaacagtgatttacaat 246

                                                                       
Query: 61  ctgcaaacagactttcttgctgaacatggagacatgagttttcttttccttccttccttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ctgcaaacagactttcttgctgaacatggagacatgagttttcttttccttccttccttc 186

                                                                       
Query: 121 cttccttccttccttccttccttccttccttccttccttccttccttccttccttccttc 180
           |||||||||||||||||||||||||||||||||||||||||||||   ||         |
Sbjct: 185 cttccttccttccttccttccttccttccttccttccttccttcc---ct---------c 138

                                                                       
Query: 181 cctccctccctccctccctcccttccttccttcccctccttccttccttctttctttgcc 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 cctccctccctccctcccttccttccttccttcccctccttccttccttctttctttgcc 78

                                                        
Query: 241 taagttaattacaaagtacgactgtgaaaataaacaagcccattg 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  taagttaattacaaagtacgactgtgaaaataaacaagcccattg 33


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 97
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)