BAC Information

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BAC

Clone NameMSMg01-232P02
Chromosome2 (Build37)
Map Location 3,952,804 - 3,952,991
singlet/doubletsinglet
Overlap genenone
Upstream gene9630050M13Rik, Nmt2, Rpp38, Acbd7, Olah, Meig1, Dclre1c, Suv39h2, Hspa14, Armetl1, LOC100040219, LOC666495, 3110001A13Rik, LOC100040257
Downstream geneLOC100040163, LOC666944, 1700080N15Rik, Frmd4a, EG634452, Prpf18, LOC623483, E130319B15Rik, LOC666973, Sephs1, Phyh, LOC381346, LOC100040250, LOC100040426, 1110017I16Rik, Mcm10, Optn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232P02.T7 (MSMg01no232_p02.b1)MSMg01-232P02.TJ (MSMg01no232_p02.g1)
ACCAG399295AG399296
length723756
length of high quality
(start - end)
316 (44 - 359)190 (128 - 317)
definitionCHROMAT_FILE: MSMg01no232_p02.b1 PHD_FILE: MSMg01no232_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:33 2005CHROMAT_FILE: MSMg01no232_p02.g1 PHD_FILE: MSMg01no232_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTACTGCCCCTGGTATTACACTATCACTCTGAGTAAAAGTTAGGTC
ACTGCCCTTCACAGGAATCTACCATCACCAAGGAAGAAAGAAGTTTCTGA
CCGTAGGAGAAACCAGAATAGATACTTAGAACTATAGCTGAGTTACACCC
ATATACAGAAATTTACAATGGTTTAGGAAGTAGATCGGGCTGTGGTGTTA
GAGTATTGCATTATTCATGAGATGGTTAGCTAGAATGAAACTCCCTAGTT
AGAACCATGACTTGGGTGTGAAAGTCCTTGCCCTAGGAGTGAAAAGTTCT
CACACCTGGTTTCTTTTACTATCCCCCCCCCTCACATAGGGCTGACTCTG
TCTCAGTTATTTTATTGCCCAGCTCCTGCCAAACTTTGTGTTTTCATTTC
CTCTGTTCTGTGTAAGAGTCATTAAGCATCCGGTAACCTCATTTGTACCT
TGTGGGTATGTCACCCAACTTCCTTATTGTCTTCTGTATAAAAAGTCTGA
TGCGCGACTTGACAAAAGGTATTCAGATCCTACTCTACCTCTCCTGTGTG
CATCTGTCTGTCAATTCATCCTACGCTTTGCCCCCCCACGACTCGAGACC
TGCTCCACGCTGACTAAAGGGCCCAGAGGGTCTGCGGCCTTATATACTTA
ACTTTTTTCCGTATCGAATTTCT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTGCTTCTACTCTCTCCCTCCTTAGG
TTTGAATGAGGAAGCCTATTGATCCCACACTGTAAGAGGTGGAATCTGTG
AGGAAAGTCAGCAGGGAGGCAAGGCTCACGAGCAAGAGTAGAACCTAAAT
ACTTAAGGGGAGTGAGGGTAAGTATGGAGCCAGAAATCCAGAGTCTGGCC
ATAGCTTCACCTTATAACCCAATGTGTGAACCAAAAGACTCTCTTGTGTT
ATGACTAGAGACGTGGCCCAGTGTGTAAAAGTGTTGACTCTGCAAGCCTG
GATGACCCCCATAATCTTCTTTGTTTTTCCCCCCCACCCGCTAGACGTGG
TCACTGAACATCTGTAATACTAGCACCCCCCTATGCCCCCAAAAAAATGC
CTTTGGGATCCTTTTTTTGCTCCCCCGTTCAGCTGGGCTTGTGCGCCTAG
GTGGTACTGGGACAAAACCCAGGTATTGGGACCCTGGTTTCCCTCTTAGG
TAAACAACTGGATTTTTCTTAAAGGCGCGCCTTTCTTTCTCCCCTTTCCC
CTCGGCCCCCCCCTGTGCATTAGGCCCCCCGTTCCCCGGTTTTGGCCTTT
TTTGTCCCAACCAACCCCCTTTTTTGCGCCCGCCCCACACAACGTGTGTT
GTGTTTCCACCATTTTTATTTTTTCGCCCGCTCTCTTCCTTCTCAACAAT
TATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_p02.g1 MSMg01no232_p02.g1 CHROMAT_FILE:
MSMg01no232_p02.g1 PHD_FILE: MSMg01no232_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:33 2005
         (190 letters)



>mm_chr2_3952604_3953191
          Length = 588

 Score =  348 bits (180), Expect = e-100
 Identities = 187/190 (98%), Gaps = 2/190 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactgtaagaggtggaatctgtgaggaaagtcagcagggaggcaaggctcacgagcaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cactgtaagaggtggaatctgtgaggaaagtcagcagggaggcaaggctcacgagcaaga 329

                                                                       
Query: 61  gtagaacctaaatacttaaggggagtgagggtaagtatggagccagaaatccagagtctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 328 gtagaacctaaatacttaaggggagtgagggtaagtatggagccag--atccagagtctg 271

                                                                       
Query: 121 gccatagcttcaccttataacccaatgtgtgaaccaaaagactctcttgtgttatgacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gccatagcttcaccttataacccaatgtgtgaaccaaaagactctcttgtgttatgacta 211

                     
Query: 181 gagacgtggc 190
           ||||| ||||
Sbjct: 210 gagacatggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 588
Length adjustment: 8
Effective length of query: 182
Effective length of database: 580
Effective search space:   105560
Effective search space used:   105560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)