BAC Information

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BAC

Clone NameMSMg01-232P03
Chromosome2 (Build37)
Map Location 16,094,672 - 16,095,036
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667329, LOC227588, LOC625457
Downstream genePlxdc2, 4930515L03Rik, LOC383665
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232P03.T7 (MSMg01no232_p03.b1)MSMg01-232P03.TJ (MSMg01no232_p03.g1)
ACCAG399297AG399298
length720766
length of high quality
(start - end)
312 (46 - 357)365 (185 - 549)
definitionCHROMAT_FILE: MSMg01no232_p03.b1 PHD_FILE: MSMg01no232_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:33 2005CHROMAT_FILE: MSMg01no232_p03.g1 PHD_FILE: MSMg01no232_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATAAACCCAACCACACCAGAAAAGCAAGATTCACAATTAAAGTG
ATGCTGGTAGAGGATTTTATTACCACATTAATAACTCCCTTAAAAAAAAT
ACAGGAGAAGACAGCTAAATAGGTAGAAGCCCTTTAAGAGGAAACACAAA
AATACCTTAAAGAATGACAGGAGAACACAGGTAAACAGGTAAAAGACATT
AAAGAAGAAACATAAAAAGCCCTTAAAGAATTATAGGAAAACAGAAACAA
ACAGTTGAAGGAATCGAACAAAACCTTCCCAGAATCTAAAAATGGAGGTA
GAAAAACAATCACAAAGGGAGACAACTATGGCGATAGAAAACTAGGAAAG
AAATTAGGAGCCATATACATAACCACCACCAACAGAATACTAAAGATGGA
AAAGAACATCTCAGGTGCAGAAGACTCCATAGAAAATATTGATGCAACAG
TCTAAGAAAACACAAAATGCCAAAGATCCTATCCCAAAACCTCCAGAATA
TCCAGGACACGCTGAGAAGACCAAACCTACAGATAATAGGTATAGACGAG
AATGAAGACTCTCTACTTAAAGGGCCAGTATATATCTTCCACAAACCTAC
AGAAGACAATTTCCCCAATCCACAGATCGAGATTGAACATACAAGACCCC
TACCCAATTCCACATTACTT
CTTCTCTTGTTGTTCTTTTTCTTTTCCCTCCTACACCCCCAATCTCCTNN
CTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCCCGATAATCATAGGCATAAGGAGGAAGAGA
TTATATGCCTTTGGAAGGGAATTTAACCCCTGGCAATTCTGTACATTAAT
AAATTAACTTTTATTTTAAATAGTCTATCATTCAATTTAATCTATTAGTG
GGTAAAGTGGGAGGCTAAAGTTAGAAGTTACAAAGAGTGTTGATTTTTTT
CTTATTTATGTTTGAATTAATAACTTCTCATTTAATGCATGAAAAAAATA
GATTGGTTAGTCAAATAATTAACTCTGGGTAACTGCAAGTATACTATCCA
CAGTATAATTTATGTATGCTTAAATAATTTTTATTTTATTCAAATTACTA
GTTCGTTGATAGATAGCTCTTTTCCGGCATCAAGGAAAATACCAAGGAAC
TCTAAAAGCAAAGTGAATATTTATCTGCTTATGAGGAGTGATAAGAGAGC
ATCATTCAAAAAGGTACACAACTACTACAATGATTAAGTCATGCTATAAG
TCAGTTTAACAAGGATGTTGAAGACAGGAATTTATCTATAGTTCTGGGAA
ACATTGTGGCCCATGAACCTCTGTGGTCTGACCTTGAAAATAATGCTCAT
TTCCCTCACACCTTCTCTCTAATCCAGTGGTTTTAAACCCACGGTATACT
ACCATCTTGGTGATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_p03.g1 MSMg01no232_p03.g1 CHROMAT_FILE:
MSMg01no232_p03.g1 PHD_FILE: MSMg01no232_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:33 2005
         (365 letters)



>mm_chr2_16094564_16095328
          Length = 765

 Score =  690 bits (357), Expect = 0.0
 Identities = 363/365 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattctgtacattaataaattaacttttattttaaatagtctatcattcaatttaatcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aattctgtacattaataaattaacttttattttaaatagtctatcattcaatttaatcta 414

                                                                       
Query: 61  ttagtgggtaaagtgggaggctaaagttagaagttacaaagagtgttgatttttttctta 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 413 ttagtgggtaaagtgggaggctaaagttagaagctacaaagagtgttgatttttttctta 354

                                                                       
Query: 121 tttatgtttgaattaataacttctcatttaatgcatgaaaaaaatagattggttagtcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tttatgtttgaattaataacttctcatttaatgcatgaaaaaaatagattggttagtcaa 294

                                                                       
Query: 181 ataattaactctgggtaactgcaagtatactatccacagtataatttatgtatgcttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ataattaactctgggtaactgcaagtatactatccacagtataatttatgtatgcttaaa 234

                                                                       
Query: 241 taatttttattttattcaaattactagttcgttgatagatagctcttttccggcatcaag 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 233 taatttttattttattcaaattactagttcgttgatagatagctcttttctggcatcaag 174

                                                                       
Query: 301 gaaaataccaaggaactctaaaagcaaagtgaatatttatctgcttatgaggagtgataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 gaaaataccaaggaactctaaaagcaaagtgaatatttatctgcttatgaggagtgataa 114

                
Query: 361 gagag 365
           |||||
Sbjct: 113 gagag 109


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)