Query= MSMg01no233_c19.b1 MSMg01no233_c19.b1 CHROMAT_FILE:
MSMg01no233_c19.b1 PHD_FILE: MSMg01no233_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:50 2005
(320 letters)
>mm_chr2_101605865_101606584
Length = 720
Score = 596 bits (308), Expect = e-175
Identities = 314/316 (99%)
Strand = Plus / Plus
Query: 5 gaattcaatattatgttttagaacccggccacacttggagcaaagttcttccctgtacaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatattatgttttagaacccggccacacttggagcaaagttcttccctgtacaa 264
Query: 65 cttcaaaggctctccgcaagacagtcttttcaatgacacgtcttaaaagaaaaggccaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttcaaaggctctccgcaagacagtcttttcaatgacacgtcttaaaagaaaaggccaac 324
Query: 125 atttgcagtgactgaactttaagatccggttacacaagtacgcctgctttctggccatcc 184
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 325 atttgcagtgactgaactttaagatccggttacacaagtgcacctgctttctggccatcc 384
Query: 185 tactttcaagcatccatttctcccaggtacatcctaactacattgctagaaagagagtca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tactttcaagcatccatttctcccaggtacatcctaactacattgctagaaagagagtca 444
Query: 245 tgagagctgtcagccaagtgccgttgcacacacacacgaggacctgagctcagatcccaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgagagctgtcagccaagtgccgttgcacacacacacgaggacctgagctcagatcccaa 504
Query: 305 gacccacggaagagct 320
||||||||||||||||
Sbjct: 505 gacccacggaagagct 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_c19.g1 MSMg01no233_c19.g1 CHROMAT_FILE:
MSMg01no233_c19.g1 PHD_FILE: MSMg01no233_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:50 2005
(601 letters)
>mm_chr2_101762833_101763833
Length = 1001
Score = 1087 bits (562), Expect = 0.0
Identities = 596/616 (96%), Gaps = 15/616 (2%)
Strand = Plus / Minus
Query: 1 cgcagagttgttagtctcgttgaggagggaaaatgttaaatgtagcggtgtgggagaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 cgcagagttgttagtctcgttgaggagggaaaatgttaaatgtagcggtgtgggagaggc 890
Query: 61 aggcagagaaactaaataacccagagatgccgcaaattttaaaggacaagaaaataatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 aggcagagaaactaaataacccagagatgccgcaaattttaaaggacaagaaaataatat 830
Query: 121 ttaataaggcagtttcagaaggcttctccttggaggcaggtaaatgtttaaccaggagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 ttaataaggcagtttcagaaggcttctccttggaggcaggtaaatgtttaaccaggagct 770
Query: 181 ccaggcgtggggaggctgtgaactgtggtatttgccaagttctgtggtgtaaatactccc 240
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 769 ccaggcgtggggaggctgtgaactgtggtatttgccaagttctgaagtgtaaatactccc 710
Query: 241 accagggccaatttccaggtaagcacatgatgttgctgaatgtgtcaccggacacagaga 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 709 accagggccaatttccaggtaagcacatgatgttgctgaatgtgtcaccggacagagaga 650
Query: 301 ctttcaaaggttgatttgaccactgctctgggaacttggatggagatttggagttacaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ctttcaaaggttgatttgaccactgctctgggaacttggatggagatttggagttacaaa 590
Query: 361 ccaagtcaaacaaatcagtagggactccagaaatcttctgtattctgccataaagcctca 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ccaagtcaaacaaatcattagggactccagaaatcttctgtattctgccataaagcctca 530
Query: 421 gctgaagtcaaaggccactcagtctccttcttccattgcattctgaataataataataat 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gctgaagtcaaaggctactcagtctccttcttccattgcattctgaataataataataat 470
Query: 481 aat------gatgatgat---------caattgtaaggaaaaatgtcaatttgaaaactt 525
||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 469 aataataatgatgatgatgatgacgatcaattgtaaggaaaaatgtcaatttgaaaactt 410
Query: 526 ttggaaatgtagctttatgcagggttaaataagatagaaatggagatatgcatcttgttt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ttggaaatgtagctttatgcagggttaaataagatagaaatggagatatgcatcttgttt 350
Query: 586 atagtcaagcaactgg 601
||||||||||||||||
Sbjct: 349 atagtcaagcaactgg 334
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
