Query= MSMg01no234_c15.b1 MSMg01no234_c15.b1 CHROMAT_FILE:
MSMg01no234_c15.b1 PHD_FILE: MSMg01no234_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:03 2005
(535 letters)
>mm_chr2_172938344_172939278
Length = 935
Score = 874 bits (452), Expect = 0.0
Identities = 509/534 (95%), Gaps = 10/534 (1%)
Strand = Plus / Plus
Query: 2 aaaccaaaaaacccagaaccaacaatgataagaaatcaacagatggattggtaggctggg 61
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 202 aaacaaaaaaacccagaaccaacaacgataagaaatcaacagatggattggtaggctggg 261
Query: 62 ccggtccctaaaacaatcattcatcttgctcagggaattgagactgaaggatcacaagat 121
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 262 ccggtccctaaaacaatcattcatcttgctcagggaattgagactgaaggatcacaagtt 321
Query: 122 ccaagctcactaggacaacgtagacctctgaaaataaaaaggaaaggtctggggagatgg 181
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ccaagcttactaggacaacgtagacctctgaaaataaaaaggaaaggtctggggagatgg 381
Query: 182 ccgtcgggggcacacctgcctaccatgcttgagacccctcggttagtcctcagtgtaaat 241
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 382 ccgtcgggggcgcacctgcctaccatgcttgagacccctcggttagtcctcagtgcaaag 441
Query: 242 gaaagtgagcgaagcacatgctgagaggaaagggaaattatttaaatgtttgagttgctg 301
||||||||| | |||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gaaagtgagtggagcagacgctgagaggaaagggaaattatttaaatgtttgagttgctg 501
Query: 302 cttctgcaatttgttttgtttttttctgtgctgaggatggaacccgggacccttcccttc 361
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 502 cttctgcaatttgttttgtttttttctgtgctgaggatggaacccgggacctttcccttc 561
Query: 362 gtgggctgggcaagttccttcctcagcttctgggattttctccagacagtgaagccccag 421
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gtgggctgggcaagtgccttcctcagcttctgggattttctccagacagtgaagccccag 621
Query: 422 gtgaagagagaactcgctggggctccctgcacctccctgagatttatggtgcgtctgtga 481
||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 622 gtgaagagagaactcgctggggctccctg----------agatttatggtgcgtctgtga 671
Query: 482 tgaaaggccaccccggccggtcacctcacctgtgtgggtgttcacatggttcct 535
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 672 tgaaaggctaccccggccgggcacctcacctgtgtgggtgttcacatggttcct 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no234_c15.g1 MSMg01no234_c15.g1 CHROMAT_FILE:
MSMg01no234_c15.g1 PHD_FILE: MSMg01no234_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:03 2005
(290 letters)
>mm_chr2_172993096_172993785
Length = 690
Score = 543 bits (281), Expect = e-159
Identities = 287/289 (99%)
Strand = Plus / Minus
Query: 1 catgtcatcccatggactactcaagagtactcctcatggctcccagctcttcctgggctc 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 489 catgtcatcccatggactactcaagagtgctcctcatggctcccagctcttcctgggctc 430
Query: 61 cctgtgtgcctgtgttttagtggtgacagatgtactgatggcatatggaagagctatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 cctgtgtgcctgtgttttagtggtgacagatgtactgatggcatatggaagagctatgat 370
Query: 121 ggttcagttgctgtcttagtgataaggtggaaggcagactgaggataggcacaggggtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ggttcagttgctgtcttagtgataaggtggaaggcagactgaggataggcacaggggtta 310
Query: 181 taactggtccatggagggagattgagtgagtggagactgaaggcaagagggtgaaggcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 taactggtccatggagggagattgagtgagtggagactgaaggcaagagggtgaaggcat 250
Query: 241 ggatgatgtataacatctagacgcatagatggttggagaatatctacat 289
|||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ggatgatgtagaacatctagacgcatagatggttggagaatatctacat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
