BAC Information

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BAC

Clone NameMSMg01-234G04
Chromosome2 (Build37)
Map Location 82,617,441 - 82,617,720
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292
Downstream geneLOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234G04.T7 (MSMg01no234_g04.b1)MSMg01-234G04.TJ (MSMg01no234_g04.g1)
ACCAG400296AG400297
length724740
length of high quality
(start - end)
231 (128 - 358)280 (77 - 356)
definitionCHROMAT_FILE: MSMg01no234_g04.b1 PHD_FILE: MSMg01no234_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:21 2005CHROMAT_FILE: MSMg01no234_g04.g1 PHD_FILE: MSMg01no234_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCATGGCACCTGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGTATGGATGTGGAGAAAGAGGAGCACTCCTCCATTGTTGGCGG
GATTGCAGGCTTGTACAACCACTCTGGAAATCTGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACCGGATGATCCAGCAATACCTCTCCTGGGCA
TATATCCATATTATGTTTCCCACCGCCCCCCACCCGACACATGCTCCACT
ATGTTCATAGCAGCCTTATTCACCACACCCAGAAGCTGGTTTATTCCCAG
ATGCCCCTCAACATAGGAATGGATACAGACAATGTGTTACATCTACACTA
TGGAGTACTACTCATCTATTAACAAGAATGACTTTATGAACTTCCTAGTC
CAATGGATGGACCTGTAGGGCACCATTCTGAGCGATGCTTTACCTTCACC
CAGTATTTCACACCACATGCATTCACTGATAAGTGGATATTAGCCCCATA
CCTAGTATACCCTCGATTTTAGACACTATTTTGTTATCCCCTTGATCCCC
CTGAATAATGTATATTGACCCCGC
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTCATTAGTCATTAATCAACCTC
CAAATGTGACTATATACCAATCTTACTGAGGAATTATTTGAGTTAAGATA
CCCTCTTCCCTATTAATTTGAAAAGGATCAGGAAAGGGTATATAGGAAGA
TTTGAAGGGAAGGAAGTGAAGACAGAAATTATTAATTACATATAATCTAA
AAAGTATAATAAATATTTTTAAATCCCTCTAAGTATGCACAGGTTTGTAT
CAAATTGATAAAAGCCAATCGCATAAGTGATCCTTCATCAACTTGAAATG
CAAGCGCATCTTTTTATGATCCTCCCNTCTTCCCCCCTTGTTCATCCCTA
AGACAACTTATTAATAGTCCACCCAAATATAATATAGCTCTAAACGATTC
CGGTAGTTTTAACAAACTCACTTATTAAAAGCTCATTTTCTTTAAAATTT
CTCTGTCTTCAGGAGAGCAGGTTAGCTAGCACTTTGTCCCAGCTGAATAG
GCTGGCAGGAAGGGGAGTGGAATTTGGTGGGTCGGAGTTTCTCTTTTCCT
CCCTCTCCCCCCCTTTCTTCCTTTTTCATTCCTTTTTCCACTCCTTTATT
TTTTTTCCCCCCTTTTTTTTTCCCTTCCCCTATCCCTTTTTCCCTCCTTT
TTTACTGCTCTTTTTTTCTTTTTTTCTCCCTTTTTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_g04.g1 MSMg01no234_g04.g1 CHROMAT_FILE:
MSMg01no234_g04.g1 PHD_FILE: MSMg01no234_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:21 2005
         (280 letters)



>mm_chr2_82617241_82617920
          Length = 680

 Score =  526 bits (272), Expect = e-154
 Identities = 278/280 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcattagtcattaatcaacctccaaatgtgactatataccaatcttactgaggaatta 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcattagtcgttaatcaacctccaaatgtgactatataccaatcttactgaggaatta 260

                                                                       
Query: 61  tttgagttaagataccctcttccctattaatttgaaaaggatcaggaaagggtatatagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgagttaagataccctcttccctattaatttgaaaaggatcaggaaagggtatatagg 320

                                                                       
Query: 121 aagatttgaagggaaggaagtgaagacagaaattattaattacatataatctaaaaagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagatttgaagggaaggaagtgaagacagaaattattaattacatataatctaaaaagta 380

                                                                       
Query: 181 taataaatatttttaaatccctctaagtatgcacaggtttgtatcaaattgataaaagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taataaatatttttaaatccctctaagtatgcacaggtttgtatcaaattgataaaagcc 440

                                                   
Query: 241 aatcgcataagtgatccttcatcaacttgaaatgcaagcg 280
           ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 aatcgcacaagtgatccttcatcaacttgaaatgcaagcg 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)