Query= MSMg01no234_g18.b1 MSMg01no234_g18.b1 CHROMAT_FILE:
MSMg01no234_g18.b1 PHD_FILE: MSMg01no234_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:24 2005
(235 letters)
>mm_chr2_67449458_67450093
Length = 636
Score = 410 bits (212), Expect = e-119
Identities = 230/236 (97%), Gaps = 1/236 (0%)
Strand = Plus / Plus
Query: 1 tggcccaagggtttttggcagcataacatgtattgaacccttaggaacccctcagtaa-t 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 tggcccaagggtttttggcagcataacatgtattgaacccttaggaacccctcagtaaat 260
Query: 60 agataagaagccaaaacaaccaagttaaggagaccgagaagcatctgctgtagcaatcaa 119
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 agataagaagccaaaacaaccaagttaaggagaccaagaagcatctgctgtagcaatcaa 320
Query: 120 agcagcccacgtaatacacagacgcaggaagaaggaaaccaatccttgtatctcatcgtt 179
|||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 321 agcagcacacgtaatacacagatgcaggaagaaggaaaccaatccttttatctcatcgtt 380
Query: 180 atttcattgtgagctaatctaatttgaggaccatgtcaggaaacattcaaatggga 235
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttcattgtgagctaacctaatttgaggaccatgtcaggaaacattcaaatggga 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 636
Length adjustment: 9
Effective length of query: 226
Effective length of database: 627
Effective search space: 141702
Effective search space used: 141702
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no234_g18.g1 MSMg01no234_g18.g1 CHROMAT_FILE:
MSMg01no234_g18.g1 PHD_FILE: MSMg01no234_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:24 2005
(288 letters)
>mm_chr2_67578458_67579145
Length = 688
Score = 503 bits (260), Expect = e-147
Identities = 281/288 (97%), Gaps = 1/288 (0%)
Strand = Plus / Minus
Query: 1 accatttgtgtttatagtcatttttacactaaggaatatgttttgagatagaaatactaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 accatttgtgtttatagtcatttttacactaaggaatatgttttgagatagaaatactaa 339
Query: 61 ggatgtcaccaagaggggctatactaaacagaattataataatacagcatattgatttat 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 338 ggatgtcaccaagaggggctatactaaacagaattgtaataatacagcatattgatttat 279
Query: 121 aattatttttcataaaatgtatgatcacaaggcttttatatctgactttatacttacata 180
||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||
Sbjct: 278 aattatttttcataaaacataagatcacaaggcttatatatctgactttatacttacata 219
Query: 181 tttaaatataatattgtaagctaggcggtggtggcatacaattttaatcccagcacttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tttaaatataatattgtaagctaggcggtggtggcatacaattttaatcccagcacttgg 159
Query: 241 gaggcagaggctaggtggatttctgagtttgaggccagcctgatctac 288
||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 158 gaggcagaggc-aggtggattactgagtttgaggccagcctgatctac 112
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
