Query= MSMg01no235_b15.b1 MSMg01no235_b15.b1 CHROMAT_FILE:
MSMg01no235_b15.b1 PHD_FILE: MSMg01no235_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:20 2005
(502 letters)
>mm_chr2_146588037_146588938
Length = 902
Score = 909 bits (470), Expect = 0.0
Identities = 498/516 (96%), Gaps = 14/516 (2%)
Strand = Plus / Plus
Query: 1 tttgaaatccattttaaggatttcacaataaaacccattaatgtttttcaatggcacatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgaaatccattttaaggatttcacaataaaacccattaatgtttttcaatggcacatt 260
Query: 61 aaaaattcaacagctcggtcctccacatggcctgtttccatgccagttacctggatgtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaattcaacagctcggtcctccacatggcctgtttccatgccagttacctggatgtct 320
Query: 121 cagtctaaaattgataccatgagtggcttgaagtatgtttcattttcatcaaatgtttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtctaaaattgataccatgagtggcttgaagtatgtttcattttcatcaaatgtttat 380
Query: 181 acctagtgagatagttaaggaacacatttcatttctcatatcctggatggcctgatgtac 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctagtgagatagttagggaacacatttcatttctcatatcctggatggcctgatgtac 440
Query: 241 aagccacctcatctcgatagaacagggaaatcattttaatttggtaaagtggggacagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagccacctcatctcgatagaacagggaaatcattttaatttggtaaagtggggacagat 500
Query: 301 tattgaaaccatgctcctgtttactaatagcatgctagcaataaatagcacccatgtccc 360
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 tattgaaaccatgctcctgtttactaatagcatgctagcaataaatagcattcatgtccc 560
Query: 361 agaaagcaaaaattgctgacctgaggggaaacaaaccacacacacacacacacacacaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaaagcaaaaattgctgacctgaggggaaacaaaccacacacacacacacacacacaca 620
Query: 421 cacacacacacacacacacac--------------ttcttttttccttatcttgagtgag 466
||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 cacacacacacacacacacacacacacacacacacttcttttttccttatcttgagtgag 680
Query: 467 tagaaaaatagccacttctaggaatgtgagcagagc 502
|||||||| |||||||||||||||||||||||||||
Sbjct: 681 tagaaaaagagccacttctaggaatgtgagcagagc 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_b15.g1 MSMg01no235_b15.g1 CHROMAT_FILE:
MSMg01no235_b15.g1 PHD_FILE: MSMg01no235_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:20 2005
(554 letters)
>mm_chr2_146711155_146712108
Length = 954
Score = 1025 bits (530), Expect = 0.0
Identities = 548/554 (98%)
Strand = Plus / Minus
Query: 1 caggccagcccaacctacatagtgagacactgtctacacagtgaggtactgtctcaaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 caggccagcccaacctacatagtgagacactgtctacacagtgaggtactgtctcaaaac 757
Query: 61 aaattatagggctagagatgtagctcacttgctaagtgagcaaaagtgagtaaaactgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 aaattatagggctagagatgtagctcacttgctaagtgagcaaaagtgagtaaaactgag 697
Query: 121 gtttaaaacacagcgcaagagacatagatcatttaaaccatcattgaaatgaagactcgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gtttaaaacacagcgcaagagacatagatcatttaaaccatcattgaaatgaagactcgg 637
Query: 181 ggctcggcagcagacctaacagaattagcaatgctgaaacaggtagactgaaattgtgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ggctcggcagcagacctaacagaattagcaatgctgaaacaggtagactgaaattgtgtc 577
Query: 241 atttgagactaaaaagaatgaagaaagctttcagcctcagaacaccatttacaatatcaa 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 atttgagacaaaaaagaatgaagaaagctttcagcctcagaacaccatttacaatatcaa 517
Query: 301 atacattaaagcctagatgaaaagaaaggctatgggggaacaccccaccaataatcttta 360
|||||||||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct: 516 atacattaaagcctagatgaaaagaaaggctatgggggaagaaggcagcaataatcttta 457
Query: 361 caactttggaataagcacatttcaagggtaccagaaacttaaatacaaatgaaaaggtat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 caactttggaataagcacatttcaagggtaccagaaacttaaatacaaatgaaaaggtat 397
Query: 421 tattctctaaaaaccctaagcatgactcatatatgaatcttataaaaatatctatttttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tattctctaaaaaccctaagcatgactcatatatgaatcttataaaaatatctatttttc 337
Query: 481 agtcatggtttgaatctgaaacacaattccatactaatgatactaacataagatgatagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 agtcatggtttgaatctgaaacacaattccatactaatgatactaacataagatgatagt 277
Query: 541 taccaaatcaggtt 554
||||||||||||||
Sbjct: 276 taccaaatcaggtt 263
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
