BAC Information

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BAC

Clone NameMSMg01-235I24
Chromosome2 (Build37)
Map Location 99,702,670 - 99,702,846
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621386
Downstream geneLOC668702, LOC100042907, LOC241572, LOC668705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235I24.T7 (MSMg01no235_i24.b1)MSMg01-235I24.TJ (MSMg01no235_i24.g1)
ACCAG401098AG401099
length713729
length of high quality
(start - end)
193 (118 - 310)177 (436 - 612)
definitionCHROMAT_FILE: MSMg01no235_i24.b1 PHD_FILE: MSMg01no235_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:55 2005CHROMAT_FILE: MSMg01no235_i24.g1 PHD_FILE: MSMg01no235_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXAATACCGAGCAGCCGCGGAATTCTCACC
TTTTCCCAAAAGAATGGNTGAGAAGTACCTGAAAAAATGTTCAGCATCCT
TAATCATTTTGACCACGCAAATCAAAACAACCCTGAGATTCTTCCTCACA
ACATTCAGAATGGCTAAGATCAGAAATTCAGGTGACAGCAGATGCTGACA
AGGATGTGGAGAAAGAGGAATACTCCTCCATTGGTGGTGGGATTGCAAGC
TGGTACAACCACTCTGGAAATCACTCTGGCGGTTCCCCAGAAAAATGGAC
ATAGTACTATAGTACTTTCCCACAGTACCTCTCCTGGGCATATATCCTGT
TGTTTGTTCTCCCCGCCCCGCCCGACACATGCTCCACTATGTTCATAGCA
GCCTTATTCCCCACAAATAGAAACTGGATTGAGCCCAGATGCCCTCAACA
GAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTCCTACTC
TGATATTAAAAAGAATGGATTTATGAAATTCCTAGGCAAATGGATGGACC
TGCAGAGTATCATTCTGAGTGAGGTAAGCCAATCACAAAAGAACTCACAA
GATATATACTCACTGTTAAGTGGATATTAACCCAGAAACTTAGAATACTC
TTGTTACAAGTTGCAAAACACATGAAACTCAAGAAGAACGAAGACCAAAG
TGTAGTCACTTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACAGAG
AAACCCTGTCTCANAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAA
GAAAAGATGGACAACTGTTTAATGCAATTGCCAGCTTTATTCGGAGCATC
AGACAATTTCTACTCTGAGGATTAAGAAAGTTCATTAGAGTTCAAGTTGC
ATATAATAGTGAAGATATGTGAGACAAAAAAATGTGTTTTCCTATTGAAT
CACACAAAGTATAATTTAAACAACATCTGATAAACAATACTAAGCAGCAA
TATGTAATCTTAAATTATTCCACCCCCCCCCCCCGCTACTCCTGGAGAAA
ATATGGAAAAAAATTACAAGAACACCTTCTGAGATTGGAAGAAAATATGT
TAGGCACAAAGCTTTTATCCTGTGTTCATAGTGTCCCCACAAGCATTCAG
AATTCTCAAGTGCTCCAGTTCTGTGCACACACTCAGCTTTAATTAAAAAA
AATCATTTTGTAGTAAATGATAATTAGCACAGACAACCATTACTGGACAT
AGGGCAGGGAGAGACTCAGAGACAGAGAAGAAGACAGAGGGAAAATGAAA
GACACAGAGAGGTAGACACAGAGAGAGACAGAGACTGAAAGAGAGACTGA
GACCGCTTTGAGCACTCATCCCTAAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_i24.g1 MSMg01no235_i24.g1 CHROMAT_FILE:
MSMg01no235_i24.g1 PHD_FILE: MSMg01no235_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:55 2005
         (177 letters)



>mm_chr2_99702470_99703046
          Length = 577

 Score =  319 bits (165), Expect = 5e-92
 Identities = 174/177 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaagaaaatatgttaggcacaaagcttttatcctgtgttcatagtgtccccacaagca 60
           ||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 377 tggaagaaaatatattagtcacaatgcttttatcctgtgttcatagtgtccccacaagca 318

                                                                       
Query: 61  ttcagaattctcaagtgctccagttctgtgcacacactcagctttaattaaaaaaaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttcagaattctcaagtgctccagttctgtgcacacactcagctttaattaaaaaaaatca 258

                                                                    
Query: 121 ttttgtagtaaatgataattagcacagacaaccattactggacatagggcagggaga 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttttgtagtaaatgataattagcacagacaaccattactggacatagggcagggaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)