Query= MSMg01no235_j20.b1 MSMg01no235_j20.b1 CHROMAT_FILE:
MSMg01no235_j20.b1 PHD_FILE: MSMg01no235_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:59 2005
(261 letters)
>mm_chr2_26140843_26141503
Length = 661
Score = 468 bits (242), Expect = e-136
Identities = 257/262 (98%), Gaps = 1/262 (0%)
Strand = Plus / Plus
Query: 1 aaaa-acttgaggatgcttgtgcacccaacagtatcaaatattcagggaagatttaatcc 59
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 200 aaaacacttgaggatgcttgtgcacccgacagtatcaaatattcagggaagatttaatcc 259
Query: 60 tttatgcaaaatatgtaaataaatttgcaccattagtatgcaaatttttgcttttgtttt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttatgcaaaatatgtaaataaatttgcaccattagtatgcaaatttttgcttttgtttt 319
Query: 120 aggagatggttgcatcgctgaatggagacactttaagacattccccagaagaacaggacc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aggagatggttgcatcgctgaatggagacactttaagacattccccagaagaacaggacc 379
Query: 180 ctgggccaagaaaggtcaacactgaggtctcagttccagacccaaggctaagcccagctg 239
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 380 ctgggccaagaaaggtcaaccctgaagtctcagttccagacccaaggctaagcccagctg 439
Query: 240 ctgttcatgatatacagctgta 261
|||||||||| |||||||||||
Sbjct: 440 ctgttcatgagatacagctgta 461
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 661
Length adjustment: 9
Effective length of query: 252
Effective length of database: 652
Effective search space: 164304
Effective search space used: 164304
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no235_j20.g1 MSMg01no235_j20.g1 CHROMAT_FILE:
MSMg01no235_j20.g1 PHD_FILE: MSMg01no235_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:59 2005
(290 letters)
>mm_chr2_26302285_26302974
Length = 690
Score = 470 bits (243), Expect = e-137
Identities = 272/289 (94%), Gaps = 13/289 (4%)
Strand = Plus / Minus
Query: 1 ttacctatctggtatgctttatgttcacagttcagctcagtgagaagcccctctatgtaa 60
|||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 526 ttacctatctggtatgctttatgttcacagttca---cag----------ctctatgtaa 480
Query: 61 ctgtccaggggccaccacaccagacagtgcagcctgggagaggctgactgggtagcacta 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ctgcccaggggccaccacaccagacagtgcagcctgggagaggctgactgggtagcacta 420
Query: 121 caaagaatacatggttaccaagtgctggtcacagtgtcagaagccacagggagttctgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 caaagaatacatggttaccaagtgctggtcacagtgtcagaagccacagggagttctgac 360
Query: 181 atagccttcatgcatgggagtcctgtgtgctctgtagtgcagcctaggctataacagctt 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 acagccttcatgcatgggagtcctgtgtgctctgtagtgcagcctaggctataacagctt 300
Query: 241 tgtaccatatgctgactacataggattccagggaactggggatgatgtg 289
||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 299 tgtaccagatgctgactacataggactccagggaactggggatgatgtg 251
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
