BAC Information

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BAC

Clone NameMSMg01-235L04
Chromosome2 (Build37)
Map Location 4,724,506 - 4,724,672
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040257, LOC100040163, LOC666944, 1700080N15Rik, Frmd4a, EG634452, Prpf18, LOC623483, E130319B15Rik
Downstream geneLOC666973, Sephs1, Phyh, LOC381346, LOC100040250, LOC100040426, 1110017I16Rik, Mcm10, Optn, Ccdc3, LOC100040292, Camk1d, LOC666599, Cdc123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235L04.T7 (MSMg01no235_l04.b1)MSMg01-235L04.TJ (MSMg01no235_l04.g1)
ACCAG401193AG401194
length865703
length of high quality
(start - end)
32 (47 - 78)169 (75 - 243)
definitionCHROMAT_FILE: MSMg01no235_l04.b1 PHD_FILE: MSMg01no235_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:05 2005CHROMAT_FILE: MSMg01no235_l04.g1 PHD_FILE: MSMg01no235_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAAGGTACGGCGGATT
CTTTTTTTTTTTGCGTGGGGGGGATTTGTTNANAACCACAATACAAACNA
ACAAAACACCCAACCCACACCACCCCCAACAAAAACAAAACAACAAAAAC
AACATCTTATATAAATTTCCACCCACACATCCCACCCTATATCTACACAC
CCCCACCATAAAAAACACACAATCACCCCTACATAAAAAAAATAATACAA
AACACCCAAACACAAACAATAAATTTTATTTTAAAACCACACACCCTCCT
AAAAACACCCCCCAAAAAAAATACCTAATCTCACAACAATCACAATTCTA
CTAAACTTTTTTTTTTTTTTCCATATACACAAACCACCATTAGAAACACC
ATCATCATCATATCTAACCACCCACACAATATCGCTAATAATACACCTAT
ACGTATTCCATATCGATTGGGTCCCCCCCCTTGTATTAATATAATGAAAA
TTTAAAAATGCACACGATAAACATAAAAACAACACATATAATACGAATAA
CAACCAAACAAAATATCAGAAGATAGAGACATCTCATATTTTCCTTCTAT
ATTCCCCTATAATCCTATAGTCGCCTATTCCACCCCCATCCCCACTTTAT
TGCTACCATGACTATATGTTCATGAACCCCAATACACACTCGGCCGCCAC
CATTAATAATCAAACCACACTCCCCTCACAATTTATTCTTATCCATCATT
ATGATATACAAATGACCAAATATAACCCCGTATAATACCCCCACAACCTT
CAAGTCTAACCCCCGCCCCCACCCCACACTTCTTTTCTGTCTCATATTTT
TTTATACATCCATTA
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCAGGGCAAACCCAGCCACATGCAAG
CACAAGAGAAGACACCAACATTCAGTGACTAGCTGAGTTGTAGGATGGAG
GGAGGGTGCTAGTTGGGGTGCTAAGATACAGAGCAGTGTCCAGAGGATAG
TAGGTGAGTCTGGTCTAGACCTAGCACAGTGATTCCTTCTGGATGTNCCT
TTAAGGGTGCCCCTGTGTGTCTACAAGCTTGAGCTCCATCATGTGTTGCC
TCTGAGTGAGGAAGCCAGGCTGGTAGCCCAATGAAGGACCTTAGACTATT
CTTATCCCCCCCCCCCCTTTGGCTAACTTGTCCATCCCGGAATTTAAATC
TAAGGCCCCCCGGCCCTGGTACACACCCTATAGGTTTTCCTTCCTCCTTT
GGGCCACATTTTTTTCCAATGGGCTGTCTCCCCTTGACTCGCCACATTGG
TAGGAATCCTGGGGAACCTTAATCTCCCTGATATCCCTCTTTTTTTGTGG
GAATAATTCGGGTCCTTTTTTTTATTTCCTCACACTATCTTTGGCGAGTT
GTTCACTCCCATTCACATCCCCTCAATCCTCCCCTTTTTTTTTTTCCTCC
TTTTTAAACCCCCCCCCCCCGCGGTGGTATTCTCATCCACATCCTTCTGG
ACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_l04.g1 MSMg01no235_l04.g1 CHROMAT_FILE:
MSMg01no235_l04.g1 PHD_FILE: MSMg01no235_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:05 2005
         (169 letters)



>mm_chr2_4724305_4724874
          Length = 570

 Score =  292 bits (151), Expect = 7e-84
 Identities = 163/167 (97%), Gaps = 1/167 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   cagggcaaacccagccacatgcaagcacaagagaagacaccaacattcagtgactagctg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 cagggcaaacccagccacatgcaagcacaagagaagacaccaacattcagtgactagctg 261

                                                                       
Query: 62  agttgtaggatggagggagggtgctagttggggtgctaagatacagagcagtgtccagag 121
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agttgtaggatggagggagggggctagttggggtgctaagatacagagcagtgtccagag 321

                                                          
Query: 122 gatagtaggtgagtctggtctagac-ctagcacagtgattccttctg 167
           ||||||||||||||||||||||||  ||||||||||||| |||||||
Sbjct: 322 gatagtaggtgagtctggtctagatactagcacagtgatcccttctg 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 570
Length adjustment: 8
Effective length of query: 161
Effective length of database: 562
Effective search space:    90482
Effective search space used:    90482
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)