Query= MSMg01no235_l24.b1 MSMg01no235_l24.b1 CHROMAT_FILE:
MSMg01no235_l24.b1 PHD_FILE: MSMg01no235_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:09 2005
(664 letters)
>mm_chr2_73699195_73700259
Length = 1065
Score = 1241 bits (642), Expect = 0.0
Identities = 657/664 (98%), Gaps = 6/664 (0%)
Strand = Plus / Plus
Query: 5 gaattccattctcatatc---cacatgcaggtagttagaaaaagataccaagtcctatgt 61
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccattctcaga--aagcacatgcaggtagttagaaaaagataccaagtcctatgt 261
Query: 62 cctaacttccacacatgtacatgacacatgtacctcctacaataatgataaataagaagt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cctaacttccacacatgtacatgacacatgtacctcctacaataatgataaataagaagt 321
Query: 122 aaacaaggggctaaaaaaaaactctcagtgattaataacacttgatgctcttccagagaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaacaaggggctaaaaaaaaactctcagtgattaataacacttgatgctcttccagagaa 381
Query: 182 tccaggttctgctaccagcaccctcatggtgactaaccatctgtcactcttgttcctggg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tccaggttctgctaccagcaccctcatggtgactaaccatctgtcactcttgttcctggg 441
Query: 242 ggatttgacaccctgttcttgcctcactactctggaggttgtaaggtctaaagttgtgag 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggatttgacaccctgttcttgcctcactactctggaggttgtaaggtctaaagttgtgag 501
Query: 302 atcctaaacacttcacaatggctccacctcctcaagtatattaacatattactttagagg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atcctaaacacttcacaatggctccacctcctcaagtatattaacatattactttagagg 561
Query: 362 ttaagttttcaatacataaatttcggggggggg-atccaatcaaatcacagcattcctgt 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 562 ttaagttttcaatacataaatttcggggggggggatccaatcaaatcacagcattcctgt 621
Query: 421 tatataatcagcattttctttataaatttcccagtacctaatctaaaatattagttaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tatataatcagcattttctttataaatttcccagtacctaatctaaaatattagttaata 681
Query: 481 atcttagaaagtagataaaaacaattgagaaatcttatattgtgttatcaaagaatccag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 atcttagaaagtagataaaaacaattgagaaatcttatattgtgttatcaaagaatccag 741
Query: 541 aaaaatttgtatatgctatgaatccacttatatacagtctgaagagtacaaacaagtagt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aaaaatttgtatatgctatgaatccacttatatacagtctgaagagtacaaacaagtagt 801
Query: 601 tagtagccactgagttatcatctgagttatcatttttacagtaatggaaggcagatcagt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tagtagccactgagttatcatctgagttatcatttttacagtaatggaaggcagatcagt 861
Query: 661 agtg 664
||||
Sbjct: 862 agtg 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1065
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1055
Effective search space: 689970
Effective search space used: 689970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_l24.g1 MSMg01no235_l24.g1 CHROMAT_FILE:
MSMg01no235_l24.g1 PHD_FILE: MSMg01no235_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:09 2005
(575 letters)
>mm_chr2_73843784_73844758
Length = 975
Score = 1011 bits (523), Expect = 0.0
Identities = 562/575 (97%)
Strand = Plus / Minus
Query: 1 ttttttaaaaaatagaattacagattagttgaaagggtaaattgttagatgcagaagtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 775 ttttttaaaaaatagaattacagattagttgaaagggtaaattgttagatgaagaagtga 716
Query: 61 cagagaaaataaatgtatagaaaccaaacatttttaaatattttgagttacaaatgacca 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 715 cagagaaaataaatgtatagaaaccaaacatttttaaatattttgagttacaaatggcca 656
Query: 121 tgatcttaaaaagaaatgtttccccatccctatcacgacatatgtcctgacagaagtgtc 180
|||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||
Sbjct: 655 tgatcttaaaaagaaatgtttctccatccctatcacggcatatgtcctaacagaagtgtc 596
Query: 181 cacactatacccactaccagctctcaagttcacaaccaaccagtacagtgagactttagc 240
||||| ||||||||||||| |||||||||||||| |||||| ||||| ||||||||||||
Sbjct: 595 cacaccatacccactaccaactctcaagttcacacccaaccggtacaatgagactttagc 536
Query: 241 ctctcataatgttctttaccaccataagtcagggcttcttacaggagagatggcaccatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 535 ctctcataatgttctttaccaccataagtcagggcttcttacaggagagatggtaccatg 476
Query: 301 agtcagagacaaagatcagagtaggctcagaatatcttattgttggctattaaatgtcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 agtcagagacaaagatcagagtaggctcagaatatcttattgttggctattaaatgtcct 416
Query: 361 tgaagtggaaaggataaaagagacagccttgaaaggcccacctgacacagtcactcttgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tgaagtggaaaggataaaagagacagccttgaaaggcccacctgacacagtcactcttgt 356
Query: 421 aaaccattggcttgtctttaaaaagcagcaatggagagaggatgagtcttataggtggag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aaaccattggcttgtctttaaaaagcagcaatggagagaggatgagtcttataggtggag 296
Query: 481 gtgtgagttaaaatggtgtccccagggctagggctgctagcgaaggcaggatgtcagaag 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 295 gtgtgagttaaaatggtgtccccagggctagggctgctagtgaaggcaggatgtcagaag 236
Query: 541 ttttgactgctcacacctcacacaggtgcagggtg 575
||||||||||||||||| |||||||||||||||||
Sbjct: 235 ttttgactgctcacaccccacacaggtgcagggtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
