Query= MSMg01no236_g02.b1 MSMg01no236_g02.b1 CHROMAT_FILE:
MSMg01no236_g02.b1 PHD_FILE: MSMg01no236_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:56 2005
(656 letters)
>mm_chr2_71547078_71548133
Length = 1056
Score = 1123 bits (581), Expect = 0.0
Identities = 633/655 (96%), Gaps = 9/655 (1%)
Strand = Plus / Plus
Query: 2 cgtttataaaggaatggccctacttgtaccagctatccctactactcaggtttctttttt 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 211 cgtttataaaggaatggccctacttgtaccagctatccctactactcaggtttc-ttttt 269
Query: 62 ttgttttgttttgttttactgtgacaaattccctgacaaaaagtcacagacaaaaagacg 121
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 270 ttgttttgttttgttttactgtgacaaattccctgacaaacagtcacagacaaaaacacg 329
Query: 122 tactttggctcataatttcagagaattatagtccatcataatggggaaggcatggcggat 181
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 330 tactttggctcataatttcagagaattatagtccatcataatggggaaagcatggcggat 389
Query: 182 gcacggtggacatacgcacgcacacacagcagatgtacgcacggtggatgaactgtggct 241
|||| ||||||||||||||| ||||| | |||||| | |||||||||| ||||
Sbjct: 390 gcacagtggacatacgcacg--------gcagaagcacgcacagcggatgaactgcggct 441
Query: 242 gcgtggatgcactgtggctccacagggatgaacagcgaatgcacggaggtgcatagcgga 301
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 442 gcgtggatgcactgtggctccacagggatgaacagcgaatgcacagaggtgcatagcgga 501
Query: 302 tgcacagtggcagtcccatgtagtaggaacaaggaaacagacagcaggaccaaaaccaga 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgcacagtggcagtcccatgtagtaggaacaaggaaacagacagcaggaccaaaaccaga 561
Query: 362 gttcagcaataacttggtaaggcctgagcctatgacccattttctccaaccagacaccca 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gttcagcaataacttggtaaggcctgagcctatgacccattttctccaaccagacaccca 621
Query: 422 tctcttgaaggttccacaacctcccaaaatagtgctacttagctggggattgaactttca 481
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tctcttgaaggttccacagcctcccaaaatagtgctacttagctggggattgaactttca 681
Query: 482 aaaggtgagcctgtggggacatttcagattcaaaccataacctattgcttcataaattat 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aaaggtgagcctgtggggacatttcagattcaaaccataacctattgcttcataaattat 741
Query: 542 aaatgaattataaattctcaagtctcattcccccacatctaagctatagggaaagagagc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aaatgaattataaattctcaagtctcattcccccacatctaagctatagggaaagagagc 801
Query: 602 aggcttatttttaattcgactacctttataaaagtgtgaatttcgtaccatgcaa 656
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 802 aggcttatttttaattcgactacctttataaaagtatgaatttcataccatgcaa 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_g02.g1 MSMg01no236_g02.g1 CHROMAT_FILE:
MSMg01no236_g02.g1 PHD_FILE: MSMg01no236_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:56 2005
(650 letters)
>mm_chr2_71699834_71700883
Length = 1050
Score = 1137 bits (588), Expect = 0.0
Identities = 591/592 (99%)
Strand = Plus / Minus
Query: 1 tctattttatagatggaggaacaagagcccagacctgagactatacccctacccacaggg 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 596 tctattttatagatggaggaacaagagcccagacctgagactacacccctacccacaggg 537
Query: 61 tcacatgattgcagggtcacattattaagaggtgaggctgccttgccccaggtctgagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tcacatgattgcagggtcacattattaagaggtgaggctgccttgccccaggtctgagct 477
Query: 121 cttaggtaacacccacctgtctgcattgaggatggcatctctagctgctcagccaggcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 cttaggtaacacccacctgtctgcattgaggatggcatctctagctgctcagccaggcac 417
Query: 181 agaagttaccacaaacaagaggcacttttattccatgggcagaagactctgaaaacacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 agaagttaccacaaacaagaggcacttttattccatgggcagaagactctgaaaacacag 357
Query: 241 gccacttggtgatctttaaggcagtcttcaccgtggccgtacttagaatggaattactct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gccacttggtgatctttaaggcagtcttcaccgtggccgtacttagaatggaattactct 297
Query: 301 cagggcaagtttaagatttgcccagaaaggctcacaattcaactgtcagtatctccactt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cagggcaagtttaagatttgcccagaaaggctcacaattcaactgtcagtatctccactt 237
Query: 361 gggggttttaatcgtgataagtataaagttaatttaggaaggtggggacaggaatgtcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 gggggttttaatcgtgataagtataaagttaatttaggaaggtggggacaggaatgtcat 177
Query: 421 cctcggctacctaataaagtcaacgacaacctggctctgtgagaccccgtctcaaaaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 cctcggctacctaataaagtcaacgacaacctggctctgtgagaccccgtctcaaaaaac 117
Query: 481 aagcaaaacagttctctcaaacttattaatgctatcttttcattgttgtatggagacaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 aagcaaaacagttctctcaaacttattaatgctatcttttcattgttgtatggagacaag 57
Query: 541 gtcttcctgtgtagccctggcttgtttggaacttttgatacagttgagtctg 592
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 gtcttcctgtgtagccctggcttgtttggaacttttgatacagttgagtctg 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
