BAC Information

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BAC

Clone NameMSMg01-236I20
Chromosome2 (Build37)
Map Location 64,711,018 - 64,711,317
singlet/doubletsinglet
Overlap genenone
Upstream geneFign, LOC620544, LOC667291
Downstream geneGrb14, Cobll1, LOC383705, 9330158F14Rik, Scn3a, Scn2a1, A330102K23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236I20.T7 (MSMg01no236_i20.b1)MSMg01-236I20.TJ (MSMg01no236_i20.g1)
ACCAG401771AG401772
length755754
length of high quality
(start - end)
703 (46 - 748)300 (382 - 681)
definitionCHROMAT_FILE: MSMg01no236_i20.b1 PHD_FILE: MSMg01no236_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:08 2005CHROMAT_FILE: MSMg01no236_i20.g1 PHD_FILE: MSMg01no236_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCTTATCCCTAAACATTATAAAAGCAATCTACAGCAAACCAG
TAGCCAACATCAAACTAAATGGACAGAAGCTGGAAGCAATCCCACTAAAA
TCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGT
ACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGA
TACAAATGGGAAAAGAGGAAGTCAAAATATCAATTTTTGCAGATGATATG
ATAGTATATATAAGTGACCCCAAAAATTCCACCAGAGAACTCCTAAACCT
GATAAACAGCTTCAATGCAATAGCTGGATATAAAATTAACTCAAACAAAT
CATTGGCCTTTCTCTACACAAAGGATAAACAGGAGGAGAAAGAAATTAGG
GAAACAACACCCTTCACAATTGTCACAAATAATATAAAATACATTGGTGT
GACTCTAAGGAAGTGAAAGATCTGTATGACAAGAACTTCAAGTCTCTGAA
GAAAGAAATTGAAGAATATCTCAGAATATGGAAAGATCTACCATGCTCAT
GGATTGGCAAGATAGTAAAAATGGCTATCCTGCCGAAAGCAATCTACAGA
TTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCACTGAGTTAGA
AAGGGCAATTTGCAAATTCATCTGGAATAATAAAAAAACCTAGGATAGCA
AATAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGAATAGAAGTTTGGGGAATGCTG
CATCGTGAGATGATATATAGGGCCAGGCAACGAGATTACAGAGAGGTGCC
AAACAGCAAGTCCGATTGACTAGAGTTGCTGTTTTGGAACTGTACAGTGC
TGTGTTTTTGTCCCAGCTTGGTCACTTGTTTCTAGTGAGAGATGGGGTAG
GATACTTCTGCTTCAAACCTCACCTGTCTTGTCTGTTAAGCGAAGATGGC
AATTGGATAGATAGCAATTTGTCTGGGGCTGATATATGCCCTGAGGATTT
TTAGCATTGTTTCTGGACTCGCCCCACTCATATAGCAATAGTACCATGTC
TCCAACCCATGTTCTGACAGTCTCCCATGTTTCCTGGAGAAAAAGGTTCT
AGCTGAAGGCTACAGTGATATTCTGGAAGAAATAATGAAGTTCCACATGG
AGTACGTAGGATTGTATCTCCCATGTAATGGTTCTCAGTAAGTAGTTACA
TACATACCACTGGTAAAAATCTGAGCACTATGATTAGATAGTAAGTAAGG
TTGACAATAGCTTCTGTCGATCACCACCAATGCCTGAACATTCTTCGTTC
AGGTTTTCAGCTAGCCTTTCTCTGTTTTCACTTGAAGAAGAAATAGGTTT
TGAGGAAAACCTTCTTTGCTGCTTTTCATGTATTCTCTGTCTGAGCTTTT
GACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_i20.g1 MSMg01no236_i20.g1 CHROMAT_FILE:
MSMg01no236_i20.g1 PHD_FILE: MSMg01no236_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:09 2005
         (300 letters)



>mm_chr2_64710818_64711517
          Length = 700

 Score =  572 bits (296), Expect = e-168
 Identities = 299/300 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagcaatagtaccatgtctccaacccatgttctgacagtctcccatgtttcctggagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atagcaatagtaccatgtctccaacccatgttctgacagtctcccatgtttcctggagaa 441

                                                                       
Query: 61  aaaggttctagctgaaggctacagtgatattctggaagaaataatgaagttccacatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaaggttctagctgaaggctacagtgatattctggaagaaataatgaagttccacatgga 381

                                                                       
Query: 121 gtacgtaggattgtatctcccatgtaatggttctcagtaagtagttacatacataccact 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtatgtaggattgtatctcccatgtaatggttctcagtaagtagttacatacataccact 321

                                                                       
Query: 181 ggtaaaaatctgagcactatgattagatagtaagtaaggttgacaatagcttctgtcgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggtaaaaatctgagcactatgattagatagtaagtaaggttgacaatagcttctgtcgat 261

                                                                       
Query: 241 caccaccaatgcctgaacattcttcgttcaggttttcagctagcctttctctgttttcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caccaccaatgcctgaacattcttcgttcaggttttcagctagcctttctctgttttcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)