Query= MSMg01no236_k13.b1 MSMg01no236_k13.b1 CHROMAT_FILE:
MSMg01no236_k13.b1 PHD_FILE: MSMg01no236_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:16 2005
(685 letters)
>mm_chr2_50197472_50198559
Length = 1088
Score = 1071 bits (554), Expect = 0.0
Identities = 579/588 (98%), Gaps = 3/588 (0%)
Strand = Plus / Minus
Query: 101 tttttttctcttcaagtactgtatatttcataaacatagactatattccaagcaagaatg 160
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 tttttttctcttcaaatactgtatatttcataaacatagactatattccaagcaagaatg 1029
Query: 161 tttttaataaatttaggcttgaaaaggacacatcaaaacataaaggcgctcttacgatat 220
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1028 tttttaataagcttaggcttgaaaaggacacatcaaaacataaaggcgctcatacgatat 969
Query: 221 gtcttaaaaacaagatgtgagacgtttagcttttgaaaggttaaataaatataatttaaa 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 gtcttaaaaacaagatgtgagacgtttagcttttgaaaggttaaataaatataatttaaa 909
Query: 281 aactttaattttcttttaaagctttctcctttgcaaaaatattccatgtcaatcctacca 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 aactttaattttcttttaaagctttctcctttgcaaaaatattccatgtcaatcctacca 849
Query: 341 atggttctggaaggaaggaaggaaaaattgatcctaagatgtcaggacagttgaagatga 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 atggttctggaaggaaggaaggaaaaattgatcctaagatgtcaggacagttgaagatga 789
Query: 401 gatt-aaaaaaaaaagagagaga--cttgatatctcacaatgtggaattaatgttaagat 457
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 788 gatttaaaaaaaaaagagagagagacttgatatctcacaatgtggaattaatgttaagat 729
Query: 458 taaagtagagcaaatatgtgtcgtgcatagaacataaaagttagccactgagagaaagta 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 728 taaagtagagcaaatatgtgtcgtgcatagaacataaaagttagccactgagagaaaata 669
Query: 518 attatcaaattacaagaaactggaaaataaatcccatcattgaactcgaagacttgatgg 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 attatcaaattacaagaaactggaaaataaatcccatcattgaactcgaagacttgatgg 609
Query: 578 caatctcaaagggatcaaattcagcctcttatcaatacaaggcttaagtctcttccacag 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 caatctcaaagggatcaaattcagcctcttatcaatacaaggcttaagtctcttccacag 549
Query: 638 gggactaatcaaatatacgctcaccagtatttaaaaacacacaggggt 685
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gagactaatcaaatatacgctcaccagtatttaaaaacacacaggggt 501
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1088
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1078
Effective search space: 727650
Effective search space used: 727650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_k13.g1 MSMg01no236_k13.g1 CHROMAT_FILE:
MSMg01no236_k13.g1 PHD_FILE: MSMg01no236_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:16 2005
(304 letters)
>mm_chr2_50113280_50113982
Length = 703
Score = 514 bits (266), Expect = e-150
Identities = 277/284 (97%), Gaps = 7/284 (2%)
Strand = Plus / Plus
Query: 1 tttgaaattcatatttataagtgttctctccattttacgaattaacccc---ttgtttaa 57
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tttgaaattcatatttataagtgttctctccattttacgaattaa----attttgtttaa 256
Query: 58 attgatttctttgtagaccattgttagaggattggtgattatttagtggggcatattttc 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 attgatttctttgtagaccattgttagaggattggtgattatttagtggggcatattttc 316
Query: 118 ttgatttttcatattgttcttgtttttatgagaactgggattgtagagttaggatgctgg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttgatttttcatattgttcttgtttttatgagaactgggattgtagagttaggatgctgg 376
Query: 178 ttgcctttttatatgagttgttactcctttgggctagaatcccaaagttggttactacac 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttgcctttttatatgagttgttactcctttgggctagaatcccaaagttggttactacac 436
Query: 238 tgggtggtttggggaaggaatgaagtgggagggtggagagaatt 281
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgggtggtttggggaaggaatgaagtgggagggtggagagaatt 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 703
Length adjustment: 9
Effective length of query: 295
Effective length of database: 694
Effective search space: 204730
Effective search space used: 204730
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
