BAC Information

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BAC

Clone NameMSMg01-237G21
Chromosome2 (Build37)
Map Location 119,727,765 - 119,864,369
singlet/doubletdoublet
Overlap geneMga, Mapkbp1, Pla2g4b
Upstream geneBahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403
Downstream geneSpnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237G21.T7 (MSMg01no237_g21.b1)MSMg01-237G21.TJ (MSMg01no237_g21.g1)
ACCAG402379AG402380
length729755
length of high quality
(start - end)
194 (104 - 297)235 (128 - 362)
definitionCHROMAT_FILE: MSMg01no237_g21.b1 PHD_FILE: MSMg01no237_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:15 2005CHROMAT_FILE: MSMg01no237_g21.g1 PHD_FILE: MSMg01no237_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,864,176 - 119,864,369)(119,727,765 - 119,727,999)
sequence
CTCACAGATTCGNGAGGGGGNGCGGAATTCCTTCCCACTTACTACAAAAT
CCCGACCCCACCAGCCAACGGCAACCTCCAGCACTCTGCCCACATTCAAC
CCACCAGGTGGATCCTGAAGCCCCCGTGATATAGGAGATGCAGTCGAGAA
GGCCGAGCTCCTGCAGGCCGGCCAGCTGCCCATACAAAGACGTCATGGCC
CGGATCCCACCACCAGTGGCCATCACGGCAATCTCGTGGATCTGGAAGAG
GAAAGCCAGGTTCAAAGCCAGGGCCTGAGGGATGGAGAAAGCTACACTTG
AATACGGTTTGATGGTTGGTCAGCATGTGACTGAATCTTGTTTTTTCTCC
CCCCCACCCCTGTTAAAAATCTAGTCAGAAGCAGCCTTCCAAAGGTCTTG
CTGTTTCAAACATCAGGGCTCCAGGAAGAACAGCCTGACGGGCCAGGCTT
TATTGCCTATTGGCAGCCCATAAGGAGTCTGGGATCACTTTCTGGAAGCC
CCAAGGCTCCTTCAAAAGTCTCCCAAAGGTCCTGCTCGCCAGTGCTGGAA
TTTATTTTCTAGGAGACAGCTGAGGTTATTCTGAGCCAAGAGACCCTCGT
ACTAGCGAGTCTACCTTACTCACCAGTCAGGTGGGGGACTCTTTATTTTG
TATTGCAGGCTCCCCTATGTGTAAATTCCCATCTGTGAGTATCAGGGACC
TTCCGTATCATTCTGTACACATTGAGGAN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCAGAAAAACCCTTAAACGTACTTATTTTTTGGCAA
TTTCATACTTGTATCTTGCTTCGCCCTGCATGAATTTTAGTAATTGTCAT
CCCTACTTCTCACCCTCATTTCTTCTCTCCCTCTCCAATTGAAACCTTTT
TTCGTCTGTCTGTGAGTCAGTGAGTTTAAAGGTTTTAGATAAATGTTTAG
TATGTGCATGTATGTGTCTGCATGTCACCTAATGAACATTGAGGTCAAAG
GAAAGGGTTTAAAAATCAATTCTCTTTATTCACTTTTTTGTAAGGTTCAG
GGATTGAACTTGTATTTTTTGGCTCCCCCGACCTGCTGACCCATCTCTCT
GACCTCTACTAAGTTTAAGTAGGGTTGATAGCATAAACATGGGTAGGTGA
TTATTTACTGGAACATGGGCAAGTTTATCTGTGCCTGTACCACTGACTGG
CTTTGAACTTGTGCTCTTTCTCCATCTCCCAAGTGTGTAGAGTACAGGTC
TGTGCCACTACTCCTGGTATACGCAGGGCTGGAAATACCCAGGGCTTTAT
GTGTGCTAGGCAAATCTCTACCAGATGAGTTACAGTTGTATTTTTGTTAG
AAAAATTCTGAGTTGACTAAAGTTCTGTTTTTTGCTCGTTTGCTTGTTTT
TTAGGATGAAAAAGCATTTGTAACTATGAATTGACTACAGTTTTCTTACT
ACTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_g21.b1 MSMg01no237_g21.b1 CHROMAT_FILE:
MSMg01no237_g21.b1 PHD_FILE: MSMg01no237_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:15 2005
         (194 letters)



>mm_chr2_119863976_119864569
          Length = 594

 Score =  360 bits (186), Expect = e-104
 Identities = 192/194 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaggtggatcctgaagcccccgtgatataggagatgcagtcgagaaggccgagctcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ccaggtggatcctgaagcccccgtgatataggagatgcagtcgagaaggccgagctcctg 335

                                                                       
Query: 61  caggccggccagctgcccatacaaagacgtcatggcccggatcccaccaccagtggccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 caggccggccagctgcccatacaaagacgtcatggcccggatcccaccaccagtggccat 275

                                                                       
Query: 121 cacggcaatctcgtggatctggaagaggaaagccaggttcaaagccagggcctgagggat 180
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cacggcaatcacggggatctggaagaggaaagccaggttcaaagccagggcctgagggat 215

                         
Query: 181 ggagaaagctacac 194
           ||||||||||||||
Sbjct: 214 ggagaaagctacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no237_g21.g1 MSMg01no237_g21.g1 CHROMAT_FILE:
MSMg01no237_g21.g1 PHD_FILE: MSMg01no237_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:15 2005
         (235 letters)



>mm_chr2_119727565_119728199
          Length = 635

 Score =  455 bits (235), Expect = e-132
 Identities = 235/235 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcatgaattttagtaattgtcatccctacttctcaccctcatttcttctctccctctcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcatgaattttagtaattgtcatccctacttctcaccctcatttcttctctccctctcca 260

                                                                       
Query: 61  attgaaaccttttttcgtctgtctgtgagtcagtgagtttaaaggttttagataaatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgaaaccttttttcgtctgtctgtgagtcagtgagtttaaaggttttagataaatgtt 320

                                                                       
Query: 121 tagtatgtgcatgtatgtgtctgcatgtcacctaatgaacattgaggtcaaaggaaaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtatgtgcatgtatgtgtctgcatgtcacctaatgaacattgaggtcaaaggaaaggg 380

                                                                  
Query: 181 tttaaaaatcaattctctttattcacttttttgtaaggttcagggattgaacttg 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaaaaatcaattctctttattcacttttttgtaaggttcagggattgaacttg 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)