Query= MSMg01no237_i08.b1 MSMg01no237_i08.b1 CHROMAT_FILE:
MSMg01no237_i08.b1 PHD_FILE: MSMg01no237_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:22 2005
(315 letters)
>mm_chr2_91404591_91405305
Length = 715
Score = 563 bits (291), Expect = e-165
Identities = 306/311 (98%)
Strand = Plus / Minus
Query: 5 gaattctggaacaggcagagctacttgagaaacccagtcttgaaattgtttaacaaacaa 64
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattctagaacaggcagagctacttgagaaacccagtcttgaaattgtttaacaaacaa 456
Query: 65 aaaacccattatcccaacaaaaaaagaaactagcaataaataaacaaaaattcacaaaat 124
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aaaacccacaataacaacaaaaaaagaaactagcaataaataaacaaaaattcacaaaat 396
Query: 125 catgttaagtactactctgaaattttattatcttttactttttgatggattcatatataa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 catgttaagtactactctgaaattttattatcttttactttttgatggattcatatataa 336
Query: 185 atacacacactcacacacatacagtatattgtaattactggcatacttatctactcttaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 atacacacactcacacacatacagtatattgtaattactggcatacttatctactcttaa 276
Query: 245 ctttctctcatccgtattactcaccctcttccatacatgcacccttttcaacattcatgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ctttctctcatccgtattactcaccctcttccatacatgcacccttttcaacattcatgc 216
Query: 305 ctttctgtact 315
|||||||||||
Sbjct: 215 ctttctgtact 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_i08.g1 MSMg01no237_i08.g1 CHROMAT_FILE:
MSMg01no237_i08.g1 PHD_FILE: MSMg01no237_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:22 2005
(249 letters)
>mm_chr2_91281108_91281756
Length = 649
Score = 408 bits (211), Expect = e-118
Identities = 242/255 (94%), Gaps = 8/255 (3%)
Strand = Plus / Plus
Query: 1 agttcatccactatgatggaaggttgttttcttcagaaatagtcaaaccctcaaatggaa 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 agttcatccactatgatggaaggttgttttcttcagaaatagtcaaaaactcaaatggaa 260
Query: 61 tccttagatagcaggtagaaaaatgcctagaggcaatcattataggtgtccctggaacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccttagatagcaggtagaaaaatgcctagaggcaatcattataggtgtccctggaacct 320
Query: 121 atacccaaaccctaaagagaggttctaaacggacttcagaggagtactcagctgtagctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacccaaaccctaaagagaggttctaaacggacttcagaggagtactcagctgtagctt 380
Query: 181 tggtgttttgttttgttttgttttg-ttt----ttttggtgtgtgtgt--gtgtgtgtct 233
|||||||| |||||| ||||||||| ||| ||||||||||||||| |||||||| |
Sbjct: 381 tggtgttt-gttttggtttgttttggtttggttttttggtgtgtgtgtaagtgtgtgtgt 439
Query: 234 ctgtgtgtgtgtgtg 248
||||||||||||||
Sbjct: 440 gtgtgtgtgtgtgtg 454
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
