Query= MSMg01no237_k19.b1 MSMg01no237_k19.b1 CHROMAT_FILE:
MSMg01no237_k19.b1 PHD_FILE: MSMg01no237_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:33 2005
(249 letters)
>mm_chr2_82079874_82080522
Length = 649
Score = 416 bits (215), Expect = e-121
Identities = 242/251 (96%), Gaps = 3/251 (1%)
Strand = Plus / Plus
Query: 1 tgagtagctgtgatacctgagacaaagagacaatggtatagatagttcatacgtcaacaa 60
||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||
Sbjct: 201 tgagtagctgtgatacctgagacaaagagacaaaggtatagatagtacatatgtcaacaa 260
Query: 61 cgctgatgagggcctacttcatagctcatgcagaagtctaaaacaaagat-acatgcact 119
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 261 cgctgatgagggcctacttcatagctcatgcagaagtctaaaacaaagatga-atgcact 319
Query: 120 gtgttgtagtgattggttatgctatgctccagacctatgcaaagctggaagtgatctagt 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 320 gtgttgtagtgattggttatgctatgctccagacctatgcaaagctggaagtgatccagt 379
Query: 180 ttgaatcagtttacagtgtacagat-tctctctctctctctctctctctctctctctctc 238
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 380 ttgaatcagtttacagcatacagatctctctctctctctctctctctctctctctctctc 439
Query: 239 tctctctctct 249
|||||||||||
Sbjct: 440 tctctctctct 450
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no237_k19.g1 MSMg01no237_k19.g1 CHROMAT_FILE:
MSMg01no237_k19.g1 PHD_FILE: MSMg01no237_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:33 2005
(688 letters)
>mm_chr2_82151292_82152379
Length = 1088
Score = 1060 bits (548), Expect = 0.0
Identities = 554/556 (99%)
Strand = Plus / Minus
Query: 133 cctgacacatactgagctggactgctggtatcctgacaaacagaaattagaatcactcca 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 cctgacacatactgagctggactgctggtatcctgacaaacagaaattagaatcactcca 1029
Query: 193 aacaactacttctaaagaggtccacatgcccttgtcctgtttgtcatcttttctccccta 252
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 aagaactacttctaaagaggtccacatgcccttgtcctgtttgtcatcttttctccccta 969
Query: 253 cctttggtcaatgggctaaaggggggattgaaacatttgagaaaccttattaaagtaatt 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 cctttggtcaatgggctaaaggggggattgaaacatttgagaaaccttattaaagtaatt 909
Query: 313 gtgaaaaataaaagcctccagatattcttggatgtgtgacattacataggaatatggttg 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 gtgaaaaataaaagcctccagatattcttggatgtgtgacattacataggaatatggttg 849
Query: 373 acttatcagcatatacatttttttagaaaactgaccttcttcccagcatctgataatttc 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 acttatcagcatatacatttttttagaaaactgaccttcttcccagcatctgataatttc 789
Query: 433 catatacactaggctagatgaactcaacaggcttaagagagcatatgaatttggaaataa 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 catatacactaggctagatgaactcaacaggcttaagagagcatatgaatttggaaataa 729
Query: 493 attgctagaggaaaataggaaagacacaggataggagggaatgggacatgatcttgatga 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 attgctagaggaaaataggaaagacacaggataggagggaatgggacatgatcttgatga 669
Query: 553 aaactcattacatcatatgtaaaattatcaacacaaaattttgctgtatttaaacactag 612
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 668 aaactcattacatcatatgtaaaattatcagcacaaaattttgctgtatttaaacactag 609
Query: 613 ttgtataattgactgtttatatcatttaatgtttttatatattatatgagtgctataaat 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttgtataattgactgtttatatcatttaatgtttttatatattatatgagtgctataaat 549
Query: 673 tagaaaactgtatcat 688
||||||||||||||||
Sbjct: 548 tagaaaactgtatcat 533
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space: 730884
Effective search space used: 730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
